[DH-337] upgrade R, R studio to latest version on hubs

deployments/datahub/images/default/Dockerfile

@@ -50,16 +50,17 @@ RUN install -d -o ${NB_USER} -g ${NB_USER} ${R_LIBS_USER}
 # These packages must be installed into the base stage since they are in system
 # paths rather than /srv.
 # Pre-built R packages from rspm are built against system libs in jammy.
-ENV R_VERSION=4.3.2-1.2204.0
-ENV LITTLER_VERSION=0.3.18-2.2204.0
+#ENV R_VERSION=4.3.2-1.2204.0
+#ENV LITTLER_VERSION=0.3.18-2.2204.0
+ENV R_VERSION=4.4.1-1.2204.0
+ENV LITTLER_VERSION=0.3.19-1.2204.0
 RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
 RUN echo "deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/" > /etc/apt/sources.list.d/cran.list
 RUN curl --silent --location --fail https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc > /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
 RUN apt-get update --yes > /dev/null && \
     apt-get install --yes -qq r-base-core=${R_VERSION} r-base-dev=${R_VERSION} littler=${LITTLER_VERSION} > /dev/null
 
-#ENV RSTUDIO_URL https://download2.rstudio.org/server/jammy/amd64/rstudio-server-2023.06.0-421-amd64.deb
-ENV RSTUDIO_URL https://download2.rstudio.org/server/jammy/amd64/rstudio-server-2023.12.0-369-amd64.deb
+ENV RSTUDIO_URL=https://download2.rstudio.org/server/jammy/amd64/rstudio-server-2024.04.2-764-amd64.deb
 RUN curl --silent --location --fail ${RSTUDIO_URL} > /tmp/rstudio.deb && \
     apt install --no-install-recommends --yes /tmp/rstudio.deb && \
     rm /tmp/rstudio.deb

deployments/datahub/images/default/Rprofile.site

@@ -16,8 +16,7 @@ options(repos = c(CRAN = "https://packagemanager.rstudio.com/all/__linux__/jammy
 # below sets it to be binary. This may improve image build times.
 # If it works, it'd be better to dynamically set the R version as above, and
 # also the RStudio Server version if possible.
-options(HTTPUserAgent = "RStudio Server (2023.12.0.369); R (4.3.2 x86_64-pc-linux-gnu x86_64 linux-gnu)")
-
+options(HTTPUserAgent = "RStudio Server (2024.04.2.764); R (4.4.1 x86_64-pc-linux-gnu x86_64 linux-gnu)")
 
 ## Source extra Rprofile files.
 #

deployments/dev/images/default/Dockerfile

@@ -34,8 +34,8 @@ RUN apt-get -qq update --yes && \
 # These packages must be installed into the base stage since they are in system
 # paths rather than /srv.
 # Pre-built R packages from rspm are built against system libs in jammy.
-ENV R_VERSION=4.3.2-1.2204.0
-ENV LITTLER_VERSION=0.3.18-2.2204.0
+ENV R_VERSION=4.4.1-1.2204.0
+ENV LITTLER_VERSION=0.3.19-1.2204.0
 RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
 RUN echo "deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/" > /etc/apt/sources.list.d/cran.list
 RUN curl --silent --location --fail https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc > /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
@@ -45,7 +45,7 @@ RUN apt-get update -qq --yes > /dev/null && \
         r-base-dev=${R_VERSION} \
         littler=${LITTLER_VERSION} > /dev/null
 
-ENV RSTUDIO_URL https://download2.rstudio.org/server/jammy/amd64/rstudio-server-2023.06.0-421-amd64.deb
+ENV RSTUDIO_URL=https://download2.rstudio.org/server/jammy/amd64/rstudio-server-2024.04.2-764-amd64.deb
 RUN curl --silent --location --fail ${RSTUDIO_URL} > /tmp/rstudio.deb && \
     apt install --no-install-recommends --yes /tmp/rstudio.deb && \
     rm /tmp/rstudio.deb

deployments/dev/images/default/Rprofile.site

@@ -17,7 +17,7 @@ options(
 options(
   HTTPUserAgent = sprintf(
     "RStudio Server (%s); R (%s)",
-    "2022.7.1.554",
+    "2024.04.2.764",
     paste(getRversion(), R.version$platform, R.version$arch, R.version$os)
   )
 )

deployments/ischool/image/Dockerfile

@@ -1,4 +1,4 @@
-FROM rocker/geospatial:4.3.1
+FROM rocker/geospatial:4.4.1
 
 ENV NB_USER rstudio
 ENV NB_UID 1000

deployments/publichealth/image/Dockerfile

@@ -1,4 +1,4 @@
-FROM ghcr.io/rocker-org/geospatial:4.3.2
+FROM ghcr.io/rocker-org/geospatial:4.4.1
 
 ENV NB_USER rstudio
 ENV NB_UID 1000

deployments/shiny/image/Dockerfile

@@ -1,4 +1,4 @@
-FROM rocker/geospatial:4.3.2
+FROM rocker/geospatial:4.4.1
 
 ENV NB_USER rstudio
 ENV NB_UID 1000

deployments/stat20/image/Dockerfile

@@ -1,4 +1,4 @@
-FROM rocker/geospatial:4.3.2
+FROM rocker/geospatial:4.4.1
 # https://github.com/rocker-org/rocker-versioned2/wiki/geospatial_e06f866673fa
 
 ENV NB_USER rstudio