[MAINT] switch bidsschematools to pyproject.toml (#1948)

* switch to pyproject.toml

* msic

* add manifest

* fix

* try  packaging data

* fix

* rm manifest

* fix: packages.find.include

* Apply suggestions from code review

Co-authored-by: Chris Markiewicz <[email protected]>

* reorder

---------

Co-authored-by: Chris Markiewicz <[email protected]>

.pre-commit-config.yaml

@@ -11,6 +11,7 @@ repos:
       - id: end-of-file-fixer
       - id: check-yaml
       - id: check-json
+      - id: check-toml
       - id: check-ast
       - id: check-added-large-files
       - id: check-case-conflict
@@ -48,7 +49,7 @@ repos:
     rev: 7.1.1
     hooks:
       - id: flake8
-        args: [--config=tools/schemacode/setup.cfg]
+        args: [--config=tools/schemacode/.flake8]
   - repo: https://github.com/pre-commit/mirrors-prettier
     rev: v4.0.0-alpha.8
     hooks:
@@ -61,6 +62,11 @@ repos:
       - id: yamllint
         args: [-f=standard, -c=.yamllint.yml]
         files: src/schema/.*/.*\.yaml
+  - repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
+    rev: v2.14.0
+    hooks:
+      - id: pretty-format-toml
+        args: [--autofix, --indent, '4', --no-sort]
   - repo: https://github.com/codespell-project/codespell
     rev: v2.3.0
     hooks:

tools/schemacode/.flake8

@@ -0,0 +1,7 @@
+[flake8]
+max-line-length = 99
+exclude = *build/
+ignore = E203,E402,E722,W503
+per-file-ignores =
+    */__init__.py : F401
+docstring-convention = numpy

tools/schemacode/pyproject.toml

@@ -1,10 +1,82 @@
 [build-system]
-requires = ["setuptools"]
 build-backend = "setuptools.build_meta"
+requires = ["setuptools"]
+
+[project]
+name = "bidsschematools"
+description = " Python tools for working with the BIDS schema."
+authors = [{name = "bids-standard developers"}]
+maintainers = [{name = "bids-standard developers", email = " [email protected]"}]
+license = {text = "MIT"}
+readme = "README.md"
+requires-python = ">=3.9"
+dependencies = [
+    "click",
+    "pyyaml",
+    "jsonschema"
+]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "License :: OSI Approved :: MIT License",
+    "Intended Audience :: Science/Research",
+    "Topic :: Scientific/Engineering :: Information Analysis",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13"
+]
+dynamic = ["version"]
+
+[project.optional-dependencies]
+expressions = ["pyparsing"]
+render = [
+    "tabulate",
+    "pandas",
+    "markdown-it-py"
+]
+tests = [
+    "bidsschematools[expressions,render]",
+    "codecov",
+    "coverage[toml]",
+    "flake8",
+    "flake8-black",
+    "flake8-isort",
+    "pytest>6",
+    "pytest-cov"
+]
+doc = [
+    "sphinx>=1.5.3",
+    "sphinx_rtd_theme"
+]
+all = [
+    "bidsschematools[doc,tests]"
+]
+
+[project.scripts]
+bst = "bidsschematools.__main__:cli"
+
+[project.urls]
+Homepage = "https://github.com/bids-standard/bids-specification"
+
+[tool.setuptools.dynamic]
+version = {file = "bidsschematools/data/schema/SCHEMA_VERSION"}
+
+[tool.setuptools.package-data]
+bidsschematools = [
+    "data/metaschema.json",
+    "data/schema/BIDS_VERSION",
+    "data/schema/SCHEMA_VERSIO",
+    "data/schema/**/*.yaml",
+    "tests/data/**/*",
+    "tests/data/**/.bidsignore"
+]
+
+[tool.setuptools.packages.find]
+include = ["bidsschematools*"]
 
 [tool.black]
 line-length = 99
-target-version = ['py39']
 include = '\.pyi?$'
 exclude = '''
 (
@@ -21,18 +93,23 @@ exclude = '''
 )
 '''
 
+[tool.coverage.run]
+omit = [
+    "*/*/tests/*",
+    "**/tests/*"
+]
+parallel = true
+
 [tool.isort]
-profile = "black"
 multi_line_output = 3
+profile = "black"
 
 [tool.pytest.ini_options]
+addopts = "-ra --strict-markers --strict-config"
+log_cli = true
+log_cli_level = "INFO"
 markers = [
-  "validate_schema: tests that validate the schema itself",
-]
-
-[tool.coverage.run]
-parallel = true
-omit = [
-  "*/*/tests/*",
-  "**/tests/*"
+    "validate_schema: tests that validate the schema itself"
 ]
+minversion = "6.0"
+xfail_strict = true