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[ENH] BEP 020 Eye Tracking#1128

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mszinte wants to merge 187 commits intobids-standard:masterbids-standard/bids-specification:masterfrom mszinte:bep020mszinte/bids-specification:bep020Copy head branch name to clipboard

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Commits

Commits on Oct 1, 2021

• create branch bep020

  chloepasturel

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  a73a9ea

• Add datatype metadata and suffixes for eye tracking

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Commits on Nov 29, 2021

• bep020 md

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• Update 10-eye-tracking.md

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• minor update md

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• minor updates md 2

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Commits on Dec 1, 2021

• final changes and working version with mkdocs

  

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• add forgotten example

  

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• final changes

  

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Commits on Jun 15, 2022

• latest changes

  

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Commits on Jun 16, 2022

• Update 10-eye-tracking.md

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  mszinte

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Commits on Nov 12, 2022

• Apply suggestions from code review

  Remi-Gau

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• Merge branch 'master' into bep020

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• fix bad latin

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• md lint

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• fix yml

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• md lint

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• lint yml

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• add semantic line breaks

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• move suffix

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• rm CogPOID and CogAtlas yml

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• move some metadata

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• move more metadata

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• move more metadata

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• rely on task.yml for events

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• change extension to tsv

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• fix schema

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• fix links

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• fix typos

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• fix link

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Commits on Dec 5, 2022

• most of the change but mkserve not working yet

  

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Commits on Dec 6, 2022

• some more change still not working

  

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• change in mkdocs.yml based on commments

  

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• run pre-commit and fix yml

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• Merge branch 'master' into bep020

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• add eyetrack modality object

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• format markdown

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• format markdown

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Commits on Dec 7, 2022

• space missing in tabular_data/eyetrack.yaml

  

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• merging

  

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• fixing conflict for real

  

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• automatic changes by pre-commit

  

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• instru

  

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• pre-commit stuff

  

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• correct error of manipulation of logo.eps

  

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• some test

  

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• some test

  

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• some test

  

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• some test

  

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• changes of columns names

  

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Commits on Dec 8, 2022

• Update src/modality-specific-files/eye-tracking.md

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  mszinte

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• change in metadata

  

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• Merge branch 'bep020' of https://github.com/mszinte/bids-specification into bep020

  

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• test new changes with pre-commit

  

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• correct error in eyetrack.md

  

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• add RecordTimeStart and RecordTimeEnd

  

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• cahnge eye_sample to eye_timestamp

  

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• correct error example json

  

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• error in datasets links

  

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• last round of review on main doc

  

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• slight modif of SAOI

  

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• slight modif of main md

  

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• correction of space

  

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• try without modality

  

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• Update src/modality-specific-files/eye-tracking.md

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  mszinte

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  yarikoptic

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• put back mkdocs.yaml with unsorted modality specific files

  

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• Update src/modality-specific-files/eye-tracking.md

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  mszinte

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• Update src/schema/objects/metadata.yaml

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  mszinte

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• Update src/schema/objects/metadata.yaml

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  mszinte

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• Update src/schema/objects/metadata.yaml

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  mszinte

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• change after review of tsalo

  

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• Merge branch 'bep020' of https://github.com/mszinte/bids-specification into bep020

  

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• put back /tool/filetree_exampl.ipynb

  

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• instru

  

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• change on metadata based on tsalo comments

  

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Commits on Dec 16, 2022

• change to desambiguate the columns in case of two eyes recording

  

  mszinte

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• change to account for the BEP020

  

  mszinte

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• change of json example in reply to https://github.com/bids-standard/bids-specification/pull/1128/files/9f223a1488ed1ac844f1bfd63ffd93af696102fd#r1047302456

  

  mszinte

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• change RecordTimeStart and RecordTimeEnd to StartTime_eyetrack (with same name as StartTime physio) and StopTime_eyetrack

  

  mszinte

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• take out Scree settings from metadata as they were put in the main branch of bids specification

  

  mszinte

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• Merge branch 'master' into bep020

  mszinte

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• insist on calibration in the text

  

  mszinte

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• add eyetrack suffix to timeseries suffixes in task.yaml in order to add eyetrack files to other modality automatically by macros

  

  mszinte

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• point 2 on suggestion bids-standard#1128 (comment)

  

  mszinte

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Commits on Dec 24, 2022

• Merge remote-tracking branch 'upstream/master' into bep020

  Remi-Gau

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• fix markdown

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• fix markdown

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Commits on Apr 5, 2023

• Merge branch 'master' into bep020

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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  pre-commit-ci[bot]

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Commits on May 23, 2023

• Merge branch 'master' into bep020

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Commits on Jun 6, 2023

• Merge branch 'master' into bep020

  Remi-Gau

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Commits on Jun 12, 2023

• Merge remote-tracking branch 'upstream/master' into bep20

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• codespell fixes

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• schema fix

  Remi-Gau

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Commits on Jun 28, 2023

• change to follow recommandations of https://doi.org/10.3758/s13428-021-01762-8

  

  Martin Szinte

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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  pre-commit-ci[bot]

  committed
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• Merge branch 'master' into bep020

  Remi-Gau

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Commits on Jun 29, 2023

• split metadata

  Remi-Gau

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• fix metadata

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• format

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Commits on Jul 3, 2023

• fix typo

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• update example

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• make gunzip optional

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Commits on Jul 4, 2023

• Merge branch 'master' into bep020

  Remi-Gau

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Commits on Jul 5, 2023

• add required events.json metadata

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Commits on Jul 6, 2023

• fix list

  Remi-Gau

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• fix list

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Commits on Sep 7, 2023

• Merge branch 'master' into bep020

  Remi-Gau

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Commits on Oct 5, 2023

• Update eye-tracking.md

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  mszinte

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• Changes for metadata

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• Merge pull request #1 from julia-pfarr/julia

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Commits on Oct 26, 2023

• Merge pull request #5 from julia-pfarr/bep020

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• change unit of ScreenSize in example events.json

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Commits on Nov 9, 2023

• Merge pull request #6 from julia-pfarr/bep020

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Commits on Nov 20, 2023

• Update src/modality-specific-files/eye-tracking.md

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  Remi-Gau

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Commits on Nov 28, 2023

• Apply suggestions from code review

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  Remi-Gau

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  oesteban

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• Update src/schema/objects/columns.yaml

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• Update src/schema/objects/columns.yaml

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Commits on Nov 30, 2023

• Update metadata.yaml

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  mszinte

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• Merge branch 'master' into bep020

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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  pre-commit-ci[bot]

  committed
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• Update src/schema/objects/metadata.yaml

  Remi-Gau

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• fix issues in mkdocs.yml

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• hasty copy paste

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• fix time stamp

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• add placeholder for eventual publication

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• Update metadata.yaml

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  mszinte

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• Update src/modality-specific-files/eye-tracking.md

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  mszinte

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Commits on Dec 7, 2023

• Update src/modality-specific-files/eye-tracking.md

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Commits on Feb 29, 2024

• Update src/modality-specific-files/near-infrared-spectroscopy.md

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  oesteban

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• enh: a proposal for the new RecordingType (-> PhysioType) idea

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• enh: add eyetracking examples

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• enh: revise metadata specifications

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• fix: remove duplicated metadata entry

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• restore eyetrack sidecars

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• Merge pull request #8 from oesteban/bep020-proposal

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• fix: pacify codespell

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• fix: pacify markdown linter

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• fix: attempt to get line numbers on tsv files

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• fix: attempt 2 to get line numbers on tsv files

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Commits on Mar 1, 2024

• Update src/modality-specific-files/eye-tracking.md

  oesteban

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• fix: address several issues, add example datasets, pacify remark

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• enh: better ordering, clearer definitions

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• sty: pacify remark

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• enh: change zero-based to one-base indexes, more consistent with BIDS

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• fix: remove redirected URL

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• Merge branch 'master' into bep020

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• enh: add columns definition for physioevents and improve eyetracker examples

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Commits on Mar 2, 2024

• Merge branch 'master' into bep020

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• enh: clearly state specific physio types at the outset

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• enh: improving and adding example file trees

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• fix: normalize file tree macros and repare syntax of some

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• fix: typos and readability improvements

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Commits on Mar 21, 2024

• review and slight text modification

  

  Martin Szinte

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• Merge branch 'master' into bep020

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Mar 22, 2024

• Merge remote-tracking branch 'upstream/master' into bep020

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• fix: revert boilerplate about publication

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• enh: drop "old" eyetrack

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• fix: "cyclopean" value for RecordedEye metadata

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• fix: deduplicate example datasets, and move eyetrack's ones into an admonition at the beginning of its section

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• fix: missing setting eyetrack tabular data allowed to add columns

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Commits on Mar 24, 2024

• enh: deep reorganization of the section

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• fix: pacify linter

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Commits on Mar 25, 2024

• Update src/modality-specific-files/physiological-and-other-continuous-recordings.md

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• enh: move escalating events' metadata to REQUIRED into task data section

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Commits on Apr 11, 2024

• Merge remote-tracking branch 'upstream/master' into bep020

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Commits on May 29, 2024

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Commits on Jul 28, 2024

• fix unit

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• use levels to describe metadata

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• Merge remote-tracking branch 'upstream/master' into pr/mszinte/1128

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• fix typo

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• minor schema fix

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Commits on Sep 5, 2024

• Merge branch 'master' into bep020

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• fix

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Commits on Oct 3, 2024

• enh: add @Sourav-Kulkarni's suggestions about eye-tracker/screen distance

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• enh: address @qian-chu's review comment about documenting timestamp

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• enh: address @Remi-Gau's comment on column order

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Commits on Dec 18, 2024

• Update src/modality-specific-files/physiological-recordings.md

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• Update src/modality-specific-files/physiological-recordings.md

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Commits on Dec 19, 2024

• Update src/modality-specific-files/physiological-recordings.md

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