feat: properly setup of type checking (#112) #92

	name: CI

	on: [push]

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version:
	- '3.8'
	- '3.9'
	- '3.10'
	- '3.11'

	steps:
	- name: Install Python via conda.
	uses: s-weigand/setup-conda@v1
	with:
	python-version: ${{ matrix.python-version }}
	conda-channels: defaults,bioconda,conda-forge
	- name: Checkout repository
	uses: actions/checkout@v2
	with:
	lfs: true
	- name: Install mamba.
	run: conda install -y mamba
	- name: Install test dependencies via pip
	run: pip install -r requirements/test_black.txt
	- name: Run tests
	run: pytest
	- name: Create text report
	run: coverage report
	- name: Create XML report for codacy
	run: coverage xml
	- name: Coveralls
	uses: AndreMiras/coveralls-python-action@develop
	- name: Run codacy-coverage-reporter
	uses: codacy/codacy-coverage-reporter-action@master
	with:
	project-token: ${{ secrets.CODACY_PROJECT_TOKEN }}
	coverage-reports: coverage.xml
	if: ${{ matrix.python-version == '3.7' }}
	- name: Check style with black
	run: make black-check
	- name: Check style with flake8
	run: flake8 .

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