deploy: 7bd3e9a

bihealth · Nov 14, 2023 · 12b6088 · 12b6088
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diff --git a/admin/getting-access/index.html b/admin/getting-access/index.html
@@ -3195,7 +3195,7 @@ <h2 id="users">Users<a class="headerlink" href="#users" title="Permanent link">&
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/admin/maintenance/index.html b/admin/maintenance/index.html
@@ -3763,7 +3763,7 @@ <h2 id="previous-maintenance">Previous Maintenance<a class="headerlink" href="#p
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/admin/policies/index.html b/admin/policies/index.html
@@ -3217,7 +3217,7 @@ <h3 id="credentials-policies">Credentials Policies<a class="headerlink" href="#c
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/admin/provided-software/index.html b/admin/provided-software/index.html
@@ -2962,7 +2962,7 @@ <h1 id="administration-provided-software">Administration-Provided Software<a cla
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/admin/resource-registration/index.html b/admin/resource-registration/index.html
@@ -3130,7 +3130,7 @@ <h2 id="critical-partition">Critical Partition<a class="headerlink" href="#criti
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/best-practice/bashrc-guide/index.html b/best-practice/bashrc-guide/index.html
@@ -2959,7 +2959,7 @@ <h1 id="bashrc-guide"><code>~/.bashrc</code> Guide<a class="headerlink" href="#b
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/best-practice/env-modules/index.html b/best-practice/env-modules/index.html
@@ -3154,7 +3154,7 @@ <h2 id="auto-loading-a-set-of-modules">Auto-loading a set of Modules<a class="he
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/best-practice/project-structure/index.html b/best-practice/project-structure/index.html
@@ -3308,7 +3308,7 @@ <h2 id="example-wrapper-scripts-in-home-option-22">Example: Wrapper Scripts in H
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/best-practice/screen-tmux/index.html b/best-practice/screen-tmux/index.html
@@ -3133,7 +3133,7 @@ <h2 id="fix-a-broken-screen-session">Fix a broken screen session<a class="header
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/best-practice/software-craftmanship/index.html b/best-practice/software-craftmanship/index.html
@@ -3134,7 +3134,7 @@ <h2 id="understand-bash-and-shell-exit-codes">Understand Bash and Shell Exit Cod
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/best-practice/software-installation-with-conda/index.html b/best-practice/software-installation-with-conda/index.html
@@ -3133,7 +3133,7 @@ <h2 id="creating-an-environment">Creating an environment<a class="headerlink" hr
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/best-practice/temp-files/index.html b/best-practice/temp-files/index.html
@@ -3107,7 +3107,7 @@ <h3 id="use-bash-traps">Use Bash Traps<a class="headerlink" href="#use-bash-trap
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/connecting/configure-ssh/connection-problems/index.html b/connecting/configure-ssh/connection-problems/index.html
@@ -3106,7 +3106,7 @@ <h2 id="i-can-connect-but-i-get-a-password-prompt">I can connect, but I get a pa
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/connecting/configure-ssh/linux/index.html b/connecting/configure-ssh/linux/index.html
@@ -3259,7 +3259,7 @@ <h2 id="x11">X11<a class="headerlink" href="#x11" title="Permanent link">&para;<
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/connecting/configure-ssh/prerequisites/index.html b/connecting/configure-ssh/prerequisites/index.html
@@ -947,13 +947,6 @@
     What is my username?
   </a>
 
-</li>
-
-          <li class="md-nav__item">
-  <a href="#what-is-my-username_1" class="md-nav__link">
-    What is my username?
-  </a>
-
 </li>
 
       </ul>
@@ -2980,13 +2973,6 @@
     What is my username?
   </a>
 
-</li>
-
-          <li class="md-nav__item">
-  <a href="#what-is-my-username_1" class="md-nav__link">
-    What is my username?
-  </a>
-
 </li>
 
       </ul>
@@ -3041,15 +3027,13 @@ <h3 id="what-is-my-username">What is my username?<a class="headerlink" href="#wh
 <li>Access to the MDC jail node is managed by MDC IT</li>
 </ul>
 </div>
-<h3 id="what-is-my-username_1">What is my username?<a class="headerlink" href="#what-is-my-username_1" title="Permanent link">&para;</a></h3>
-<p>You simply use your Charite user name!</p>
 
   <hr>
 <div class="md-source-file">
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/connecting/configure-ssh/windows/index.html b/connecting/configure-ssh/windows/index.html
@@ -3097,7 +3097,7 @@ <h2 id="x11">X11<a class="headerlink" href="#x11" title="Permanent link">&para;<
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/connecting/from-external/index.html b/connecting/from-external/index.html
@@ -3160,7 +3160,7 @@ <h3 id="charite-vdi">Charite VDI<a class="headerlink" href="#charite-vdi" title=
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/connecting/generate-key/linux/index.html b/connecting/generate-key/linux/index.html
@@ -3033,7 +3033,7 @@ <h2 id="submit-your-key">Submit Your Key<a class="headerlink" href="#submit-your
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/connecting/generate-key/windows/index.html b/connecting/generate-key/windows/index.html
@@ -3071,7 +3071,7 @@ <h2 id="submit-your-key">Submit Your Key<a class="headerlink" href="#submit-your
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/connecting/ssh-client-windows/index.html b/connecting/ssh-client-windows/index.html
@@ -3020,7 +3020,7 @@ <h2 id="software-for-transfering-data-fromto-windows">Software for transfering d
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/connecting/submit-key/charite/index.html b/connecting/submit-key/charite/index.html
@@ -3008,7 +3008,7 @@ <h3 id="charite-zugangsportal">Charite Zugangsportal<a class="headerlink" href="
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/connecting/submit-key/mdc/index.html b/connecting/submit-key/mdc/index.html
@@ -3186,7 +3186,7 @@ <h3 id="youre-done">You're Done<a class="headerlink" href="#youre-done" title="P
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/cubit/annotations/index.html b/cubit/annotations/index.html
@@ -3033,7 +3033,7 @@ <h1 id="annotation-data">Annotation Data<a class="headerlink" href="#annotation-
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/cubit/app-support/index.html b/cubit/app-support/index.html
@@ -2997,7 +2997,7 @@ <h1 id="cubit-static-data-application-support">Cubit Static Data: Application Su
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/cubit/databases/index.html b/cubit/databases/index.html
@@ -3089,7 +3089,7 @@ <h1 id="databases">Databases<a class="headerlink" href="#databases" title="Perma
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/cubit/exomes-panels/index.html b/cubit/exomes-panels/index.html
@@ -2952,7 +2952,7 @@ <h1 id="exomes-and-panels">Exomes and Panels<a class="headerlink" href="#exomes-
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/cubit/exon-lists/index.html b/cubit/exon-lists/index.html
@@ -2949,7 +2949,7 @@ <h1 id="exon-lists">Exon Lists<a class="headerlink" href="#exon-lists" title="Pe
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/cubit/index-files/index.html b/cubit/index-files/index.html
@@ -2973,7 +2973,7 @@ <h1 id="precomputed-index-files">Precomputed Index Files<a class="headerlink" hr
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/cubit/index.html b/cubit/index.html
@@ -2946,7 +2946,7 @@ <h1 id="overview">Overview<a class="headerlink" href="#overview" title="Permanen
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/cubit/references/index.html b/cubit/references/index.html
@@ -3152,7 +3152,7 @@ <h2 id="other-reference-genomes">Other reference genomes<a class="headerlink" hr
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/first-steps/episode-0/index.html b/first-steps/episode-0/index.html
@@ -3073,7 +3073,7 @@ <h2 id="preparation">Preparation<a class="headerlink" href="#preparation" title=
 In general the users on the cluster will manage their own software with the help of conda.
 If you haven't done so so far, please <a href="../../best-practice/software-installation-with-conda/">follow the instructions in installing conda</a> first.
 The only premise is that you are able to <a href="../../connecting/configure-ssh/linux/">log into the cluster</a>.
-Make also sure that you are logged in to a computation node using ``.</p>
+Make also sure that you are logged in to a computation node using <code>srun -p medium --time 1-00 --mem=4G --ntasks=1 --pty bash -i</code>.</p>
 <p>Now we will create a new environment, so as to not interfere
 with your current or planned software stack, and install into it all the
 software that we need during the tutorial. Run the following commands:</p>
@@ -3087,7 +3087,7 @@ <h2 id="preparation">Preparation<a class="headerlink" href="#preparation" title=
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/first-steps/episode-1/index.html b/first-steps/episode-1/index.html
@@ -3189,7 +3189,7 @@ <h2 id="outlook-more-programs-and-static-data">Outlook: More Programs and Static
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/first-steps/episode-2/index.html b/first-steps/episode-2/index.html
@@ -3202,7 +3202,7 @@ <h2 id="job-queues">Job Queues<a class="headerlink" href="#job-queues" title="Pe
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/first-steps/episode-3/index.html b/first-steps/episode-3/index.html
@@ -3146,7 +3146,7 @@ <h1 id="first-steps-episode-3">First Steps: Episode 3<a class="headerlink" href=
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/first-steps/episode-4/index.html b/first-steps/episode-4/index.html
@@ -3133,7 +3133,7 @@ <h1 id="first-steps-episode-4">First Steps: Episode 4<a class="headerlink" href=
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/help/faq/index.html b/help/faq/index.html
@@ -4139,7 +4139,7 @@ <h2 id="how-can-i-exchange-data-with-external-collaborators">How can I exchange
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/help/good-tickets/index.html b/help/good-tickets/index.html
@@ -3048,7 +3048,7 @@ <h2 id="problems-submitting-jobs">Problems Submitting Jobs<a class="headerlink"
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/help/helpdesk/index.html b/help/helpdesk/index.html
@@ -3030,7 +3030,7 @@ <h2 id="helpdesk-non-scope">Helpdesk Non-Scope<a class="headerlink" href="#helpd
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>

diff --git a/help/hpc-talk/index.html b/help/hpc-talk/index.html
@@ -2937,7 +2937,7 @@ <h1 id="hpc-talk">HPC Talk<a class="headerlink" href="#hpc-talk" title="Permanen
   <small>
 
       Last update:
-      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">September 1, 2023</span>
+      <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">November 14, 2023</span>
 
 
   </small>