linting

cubi_tk/isa_tab/add_ped.py

@@ -178,7 +178,11 @@ def on_visit_material(self, material, node_path, study=None, assay=None):
 
     def on_visit_process(self, process, node_path, study=None, assay=None):
         super().on_visit_process(process, node_path, study, assay)
-        donor_name = node_path[0].name if _is_source(node_path[0]) else _sample_to_donor_name(node_path[0].name)
+        donor_name = (
+            node_path[0].name
+            if _is_source(node_path[0])
+            else _sample_to_donor_name(node_path[0].name)
+        )
         if donor_name not in self.donor_map:
             return None
         proc_config_pairs = {
@@ -481,9 +485,11 @@ def _append_assay_line_protocol(
     counter += 1
     return counter, curr
 
+
 def _sample_to_donor_name(sample_name):
     return sample_name.rstrip("-N1")
 
+
 def _donor_to_sample_name(donor_name):
     return "%s-N1" % donor_name
 

tests/test_isa_tab_add_ped.py

@@ -101,6 +101,7 @@ def test_add_ped_just_update(tmpdir):
         str(pathlib.Path(__file__).parent / "data" / "isa_tab" / "expected_output"),
     )
 
+
 def test_add_ped_sheet_subset_update(tmpdir):
     """Test updating study and assay, but only a subset of the sheet."""
     scratch_dir = tmpdir / "scratch"