Code

Outlier detection#120

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mzur merged 41 commits intomasterbiigle/largo:masterfrom sim-sortbiigle/largo:sim-sortCopy head branch name to clipboardJan 25, 2024

+4,322-1,146

Commits

Commits on Dec 6, 2023

• Update GenerateAnnotationPatch with test cases from biigle/maia

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• Merge branch 'master' into sim-sort

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Commits on Dec 8, 2023

• Implement trait to compute an annotation bounding box

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• Add ExtractFeatures script from biigle/maia

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Commits on Dec 15, 2023

• Implement feature vector models

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• Fix migration timestamp

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Commits on Dec 20, 2023

• Implement GenerateFeatureVectors job

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• Implement generating feature vectors in GenerateAnnotationPatch jobs

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Commits on Jan 4, 2024

• Generate new feature vectors for all annotation labels instead of first

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• Implement annotation label observers to copy feature vectors

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• Update/fix feature vector migration

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• Copy feature vectors when a Largo job is applied

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Commits on Jan 5, 2024

• Handle feature vector generation of whole frame annotations

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Commits on Jan 9, 2024

• Add update schema action

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Commits on Jan 10, 2024

• WIP Start implementing sorting tab with sort by ID and outlier

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Commits on Jan 11, 2024

• Implement outlier sorting UI for volume largo

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• Fix default patch sorting direction

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• Implement project largo sort by outlier controller

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Commits on Jan 12, 2024

• Implement outlier sorting in project Largo UI

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• Implement job to initialize feature vectors from thumbnails

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Commits on Jan 15, 2024

• Simplify InitializeFeatureVectorChunk job

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• Implement command to initialize feature vectors from thumbnails

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Commits on Jan 17, 2024

• WIP Implement updated feature vector initialization based on thumbnails

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Commits on Jan 18, 2024

• WIP Transform GenerateAnnotationPatch to ProcessAnnotatedFile

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• Fix data returned by volume sort by outliers controller

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• Implement missing features of ProcessAnnotationFile jobs

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Commits on Jan 19, 2024

• Make code more reusable in biigle/maia

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Commits on Jan 23, 2024

• Update Python requirements

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• Merge branch 'sim-sort-thumbs' into sim-sort

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• Finish and test refined InitializeFeatureVectorChunk job

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• Update initialize feature vector command to process only one volume

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• Fix sorting in video volume

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• Merge branch 'master' into sim-sort

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• Merge branch 'master' into sim-sort

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• WIP Update GenerateMissing command

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Commits on Jan 24, 2024

• Finish update of generate missing command with tests

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• Refactor generate missing command

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• Implement checking for feature vectors in generate missing command

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• Update manual article with sorting instructions

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• Replace annotation label observers with event handler

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Commits on Jan 25, 2024

• Update Pillow version

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