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use matched branch on bioconda-common
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need to be able to override common.sh so that bioconda-utils in host
matches that in just-built container
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daler committed Aug 13, 2024
1 parent 9b4c928 commit af16e9a
Showing 1 changed file with 7 additions and 1 deletion.
8 changes: 7 additions & 1 deletion .github/workflows/build-images.yml
Original file line number Diff line number Diff line change
Expand Up @@ -188,7 +188,13 @@ jobs:
- name: Install bioconda-utils
run: |
export BIOCONDA_DISABLE_BUILD_PREP=1
wget https://raw.githubusercontent.com/bioconda/bioconda-common/master/{common,install-and-set-up-conda,configure-conda}.sh
BRANCH=simplify-unify-containers
wget https://raw.githubusercontent.com/bioconda/bioconda-common/${BRANCH}/{common,install-and-set-up-conda,configure-conda}.sh
source images/versions.sh
# Ensure install-and-set-up-conda uses same version as in the container
# (which uses images/versions.sh
export BIOCONDA_UTILS_TAG=$BIOCONDA_UTILS_VERSION
bash install-and-set-up-conda.sh
eval "$(conda shell.bash hook)"
conda create -n bioconda -y --file test-requirements.txt --file bioconda_utils/bioconda_utils-requirements.txt
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