Bump version, update NEWS and fix some url issues

biodiverse · Feb 7, 2025 · 6ba2df4 · 6ba2df4
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: unmarked
-Version: 1.4.3.9009
-Date: 2025-02-05
+Version: 1.5.0
+Date: 2025-02-07
 Type: Package
 Title: Models for Data from Unmarked Animals
 Authors@R: c(

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,15 @@
+# unmarked 1.5.0
+
+* Add community occupancy model (occuComm)
+* Add hazard key function support to IDS
+* Large overhaul of unmarkedFit methods including getP, fitted, residuals, ranef, nonparboot, parboot, simulate etc. Most important change was to standardize missing value handling; sites with all missing values are no longer silently dropped in output 
+* Improve and standardize documentation for these methods
+* More tests for these methods
+* Use reformulas package instead of lme4 for random effects formula handling
+* Deprecate imputeMissing function
+* Fix likelihood bug in goccu when primary periods were missing
+* Fix bug in occuMulti getP method
+
 # unmarked 1.4.3
 
 * Add integrated distance sampling model function (IDS)

diff --git a/vignettes/contributing_to_unmarked.Rmd b/vignettes/contributing_to_unmarked.Rmd
@@ -295,8 +295,6 @@ You need to write the documentation files for the new classes and functions you
   - [Example for `occu`](https://github.com/biodiverse/unmarked/blob/master/man/occu.Rd)
   - [Example for `gdistremoval`](https://github.com/biodiverse/unmarked/blob/master/man/gdistremoval.Rd)
 - Add your fitting function to the reference of all functions to [_pkgdown.yml](https://github.com/biodiverse/unmarked/blob/master/_pkgdown.yml)
-- Add the specific "type" for the predict methods of your `unmarkedFit` class to [predict-methods.Rd](https://github.com/biodiverse/unmarked/blob/master/man/predict-methods.Rd)
-- Add your `getP` method for the signature of you `unmarkedFitList` object in [getP-methods.Rd](https://github.com/biodiverse/unmarked/blob/master/man/getP-methods.Rd).
 
 Depending on how much you had to add, you may also need to update existing files:
 

diff --git a/vignettes/unmarked.bib b/vignettes/unmarked.bib
@@ -74,7 +74,7 @@ @Article{fiskeChandler_2011
    volume        = {43},
    number        = {10},
    pages         = {1--23},
-   url           = {http://www.jstatsoft.org/v43/i10/}
+   url           = {https://www.jstatsoft.org/v43/i10/}
 }
 
 
@@ -85,7 +85,7 @@ @Manual{hijmans_vanEtten:2012
        author = {Robert J. Hijmans & Jacob van Etten},
        year = {2012},
        note = {R package version 1.9-67},
-       url = {http://CRAN.R-project.org/package=raster},
+       url = {https://cran.r-project.org/package=raster},
        }