Add test with 4-channel lif file

[imagejan]

Please see #8 (comment).

This pull request adds a test with the file uploaded in Arcadia-Science/readlif#52 (comment).

As a workaround for the issue in readlif, we explicitly set channel_as_second_dim to False when reading directly with readlif in the test. (The fixed version of readlif should set this to False in any case.)

With readlif-0.6.4, 3 out of 6 tests of test_sanity_check_correct_indexing fail:

• ZYX-ZYX-20250130_4Channels_5planes.lif
• ZYX-TYX-20250130_4Channels_5planes.lif
• ZYX-CYX-20250130_4Channels_5planes.lif

With the latest readlif from Arcadia-Science/readlif@586f24b, all 6 parameterized tests for this file pass.

I can't test with the existing bioio test files, so I'm just submitting this as a draft PR.

[SeanLeRoy]

This formatting is a bit funky

[imagejan]

Sorry, I had used pixi CLI to add the dependency, and that's what it produced.

I would anyways update this draft PR and review the formatting once a new version of readlif is released, and depending on feedback here how to handle the (proposed) new test file.

[evamaxfield]

Just as a note: we should only be using this PR for testing and debugging purposes to see if the upstream changes will work with BioIO as is. Last time I tried to release a Python package using the pkg-name @ git+... as a dependency (which was yesterday), PyPI explicitly rejects that specification as a dependency and doesn't allow you to release a new version of the package.

This PR is greatly appreciated but sadly we likely shouldn't merge until the upstream releases a new version ☹️