bioregistry-docker

This repository uses Docker to containerize the Bioregistry web application. A public instance maintained by the INDRA Lab is served at https://bioregistry.io.

Running

🌐 Running Locally from Source

A dockerfile for pulling the latest Bioregistry service and running its web app. Run with:

$ git clone https://github.com/biopragmatics/bioregistry-docker.git
$ cd bioregistry-docker
$ docker-compose up

🐋 Running Locally from Docker

The image is hosted on Docker Hub under [biopragmatics/bioregistry:latest] and can be run with:

$ docker run -id --name bioregistry -p 8766:8766 biopragmatics/bioregistry:latest

The default port run by the app is 8766, but the -p option lets you map it to another port.

If you want to stop/update/restart it, check the restart.sh script.

🐋 Running Remotely from Docker

$ git clone https://github.com/biopragmatics/bioregistry-docker.git
$ cd bioregistry-docker
$ ssh ADDRESS 'bash -s' < restart.sh

📡 Pushing to Docker Hub

This repository is set up with a GitHub Action to build the dockerfile and push to Docker Hub.

👋 Attribution

⚖️ License

Code is licensed under the MIT License.

🎁 Support

The Bioregistry was developed by the INDRA Lab, a part of the Laboratory of Systems Pharmacology and the Harvard Program in Therapeutic Science (HiTS) at Harvard Medical School.

💰 Funding

The development of the Bioregistry is funded by the DARPA Young Faculty Award W911NF2010255 (PI: Benjamin M. Gyori).