Cleanup

src/bioversions/sources/__init__.py

@@ -16,6 +16,7 @@
 from .chebi import ChEBIGetter
 from .chembl import ChEMBLGetter
 from .chemidplus import ChemIDplusGetter
+from .gtdb import GTDBGetter
 from .civic import CiVICGetter
 from .complexportal import ComplexPortalGetter
 from .daily import NCBIGeneGetter
@@ -137,6 +138,7 @@ def get_getters() -> List[Type[Getter]]:
         ICD10Getter,
         ICD11Getter,
         CiVICGetter,
+        GTDBGetter,
     ]
     getters.extend(iter_obo_getters())
     extend_ols_getters(getters)

src/bioversions/sources/gtdb.py

@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
 
 """A getter for GTDB."""
 
@@ -10,29 +9,27 @@
     "GTDBGetter",
 ]
 
+URL = "https://data.gtdb.ecogenomic.org/releases/latest/VERSION.txt"
+
 
 class GTDBGetter(Getter):
     """A getter for the Genome Taxonomy Database (GTDB)."""
 
     bioregistry_id = "gtdb"
-    name = "GTDB"
+    name = "Genome Taxonomy Database"
     version_type = VersionType.sequential
     date_fmt = "%b %d, %Y"  # Format to match "Apr 24, 2024"
     homepage_fmt = "https://gtdb.ecogenomic.org/"
 
     def get(self):
         """Get the latest GTDB version number from VERSION.txt."""
-        url = "https://data.gtdb.ecogenomic.org/releases/latest/VERSION.txt"
-        with requests.Session() as session:
-            res = session.get(url)
-            if res.ok:
-                lines = res.text.strip().split("\n")
-                # First line contains version like "v220"
-                version = lines[0].strip().lstrip("v")
-                # Third line contains date like "Released Apr 24, 2024"
-                date = lines[2].strip().replace("Released ", "")
-                return {"version": version, "date": date}
-            raise ValueError(f"Could not determine latest GTDB version. Status: {res.status_code}")
+        res = requests.get(URL)
+        lines = res.text.strip().split("\n")
+        # First line contains version like "v220"
+        version = lines[0].strip().lstrip("v")
+        # Third line contains date like "Released Apr 24, 2024"
+        date = lines[2].strip().replace("Released ", "")
+        return {"version": version, "date": date}
 
 
 if __name__ == "__main__":