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Enforce all references are standardized #156

Merged
merged 8 commits into from
Sep 1, 2023
Merged

Enforce all references are standardized #156

merged 8 commits into from
Sep 1, 2023

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cthoyt
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@cthoyt cthoyt commented Aug 29, 2023

Closes #155

This PR enforces that all References are valid. It proactively removes bananas and fixes casing. After instituting this, some other data had to be modified, this is a great catch!

Relies on biopragmatics/bioregistry#930.

@cthoyt cthoyt changed the title Enforce all references are valid Enforce all references are standardized Sep 1, 2023
@cthoyt cthoyt merged commit 0231c5c into main Sep 1, 2023
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@cthoyt cthoyt deleted the fix-sssom branch September 1, 2023 09:08
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pyobo.get_sssom_df() for UMLS returns prefix:PREFIX:ID
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