Merge branch 'develop'

.travis.yml

@@ -1,11 +1,44 @@
 matrix:
   include:
-    - os: linux
+    - os:       linux
+      language: perl
+      perl:     "5.22"
+      install:
+         - which cpanm
+         - cpanm -nq --installdeps .
+         - perl Build.PL
+         - perl ./Build
+         - perl ./Build test
+         - perl ./Build install
+      script:
+         - hpcrunner.pl submit_jobs -h
+         - hpcrunner.pl execute_job -h
+         - hpcrunner.pl execute_array -h
+         - hpcrunner.pl stats -h
+         - hpcrunner.pl new -h
+      #script:  ci-tests/slurm/travis-setup.sh; ci-tests/slurm/travis-run.sh # slurm testing
+    - os:       osx
       language: c
-      sudo: required
-      services:
-        - docker
-      script: ci-tests/slurm/travis-setup.sh; ci-tests/slurm/travis-run.sh # slurm testing
-    - os: osx
-      language: c
-      script: ci-tests/run-travis-perl-osx.sh #osx testing 
+      install:
+        - wget https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O miniconda.sh
+        - bash miniconda.sh -b -p $HOME/miniconda
+        - export PATH="$HOME/miniconda/bin:$PATH"
+        - hash -r
+        - conda config --set always_yes yes --set changeps1 no
+        - conda config --add channels conda-forge
+        - conda config --add channels bioconda
+        - conda update -q conda
+        - conda info -a
+        - conda create -q -n build perl perl-app-cpanminus
+        - source activate build
+        - cpanm -nq --installdeps .
+        - perl Build.PL
+        - perl ./Build
+        - perl ./Build test
+        - perl ./Build install
+      script:
+         - hpcrunner.pl submit_jobs -h
+         - hpcrunner.pl execute_job -h
+         - hpcrunner.pl execute_array -h
+         - hpcrunner.pl stats -h
+         - hpcrunner.pl new -h

Changes

@@ -1,6 +1,7 @@
 Revision history for HPC-Runner-Command
 
 {{$NEXT}}
+	- added back in stats command
 
 3.2.11  2017-09-11 13:50:17 GST
 	- Milestones - https://github.com/biosails/HPC-Runner-Command/milestone/3

META.json

@@ -58,6 +58,7 @@
             "File::Basename" : "0",
             "File::Copy" : "0",
             "File::Find::Rule" : "0",
+            "File::Glob" : "0",
             "File::Path" : "0",
             "File::Slurp" : "0",
             "File::Spec" : "0",
@@ -117,6 +118,7 @@
             "Test::Class::Moose" : "0",
             "Test::Class::Moose::Load" : "0",
             "Test::Class::Moose::Runner" : "0",
+            "Test::Exception" : "0.43",
             "Test::More" : "0",
             "Text::Diff" : "0",
             "strict" : "0",

README.md

@@ -30,7 +30,7 @@ Get help by heading on over to github and raising an issue. [GitHub ](https://me
 https:#github.com-biosails-HPC-Runner-Command-issues).
 
 Please see the complete documentation at [HPC::Runner::Command GitBooks ](https://metacpan.org/pod/
-https:#jerowe.gitbooks.io-hpc-runner-command-docs-content).
+https:#biosails.gitbooks.io-hpc-runner-command-docs-content).
 
 # Quick Start - Create a New Project
 
@@ -136,11 +136,11 @@ Within a job type we can declare dependencies on particular tasks.
 Each scheduler has its own set of variables. HPC::Runner::Command has a set of
 generalized variables for declaring types across templates. For more information
 please see [Job Scheduler
-Comparison](https://jerowe.gitbooks.io/hpc-runner-command-docs/content/job_submission/comparison.html)
+Comparison](https://biosails.gitbooks.io/hpc-runner-command-docs/content/job_submission/comparison.html)
 
 Additionally, for workflows with a large number of tasks, please see
 [Considerations for Workflows with a Large Number of
-Tasks](https://jerowe.gitbooks.io/hpc-runner-command-docs/content/design_workflow.html#considerations-for-workflows-with-a-large-number-of-tasks)
+Tasks](https://biosails.gitbooks.io/hpc-runner-command-docs/content/design_workflow.html#considerations-for-workflows-with-a-large-number-of-tasks)
 for information on how to group tasks together.
 
 ### Workflow file