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Biotite 0.4.0

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@padix-key padix-key released this 02 Dec 22:18

Changelog

  • Python 3.4 and 3.5 compatibility
  • Wheels for MacOS X
  • Changed enum type of AppState from Flag to IntEnum
  • Added class sequence.CodonTable
    • CodonTable can load NCBI codon tables
    • Removed codon table functionality from ProteinSequence
    • NucleotideSequence.translate() takes a CodonTable as optional parameter
  • Removed structure.simple_view()
  • Drastic performance increase in sequence.align.align_optimal() for affine gap penalty when using C-extensions
  • Added structure.check_duplicate_atoms()
  • Added structure.spread_residue_wise()
  • Improved performance and atom array stack acceptance in structure.dihedral_backbone()