Upgraded the version number from 0.3.2 to 0.3.3 - bug fix.

CHANGELOG.md

@@ -4,6 +4,12 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](http://keepachangelog.com/)
 and this project adheres to [Semantic Versioning](http://semver.org/).
 
+## [0.3.3] - 2024-07-21
+
+### Fixed
+
+- Fix for Issue https://github.com/blakeaw/pysb-pkpd/issues/20
+
 ## [0.3.2] - 2024-07-18
 
 ### Fixed

CITATION.cff

@@ -18,9 +18,9 @@ abstract: >-
   PySB add-on providing domain-specific macros and models
   for empirical and mechanistic PK/PD modeling. 
 license: BSD-2-Clause
-version: 0.3.2
+version: 0.3.3
 doi: 10.5281/zenodo.12775536
-date-released: '2024-07-18'
+date-released: '2024-07-21'
 references:
   - authors:
       - family-names: Lopez

README.md

@@ -3,8 +3,8 @@
 ![Python version badge](https://img.shields.io/badge/python-3.11.3-blue.svg)
 [![PySB version badge](https://img.shields.io/badge/PySB->%3D1.15.0-9cf.svg)](https://pysb.org/)
 [![license](https://img.shields.io/github/license/blakeaw/pysb-pkpd.svg)](LICENSE)
-![version](https://img.shields.io/badge/version-0.3.2-orange.svg)
-[![release](https://img.shields.io/github/release-pre/blakeaw/pysb-pkpd.svg)](https://github.com/blakeaw/pysb-pkpd/releases/tag/v0.3.2)
+![version](https://img.shields.io/badge/version-0.3.3-orange.svg)
+[![release](https://img.shields.io/github/release-pre/blakeaw/pysb-pkpd.svg)](https://github.com/blakeaw/pysb-pkpd/releases/tag/v0.3.3)
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.12775536.svg)](https://doi.org/10.5281/zenodo.12775536)
 
 __`pysb-pkpd` enables you to efficiently program and simulate dynamic PK/PD and QSP models in Python using the PySB modeling framework.__ 
@@ -56,27 +56,27 @@ Note that `pysb-pkpd` has the following core dependencies:
 
 ### pip install
 
-You can install `pysb-pkpd` version 0.3.2 with `pip` sourced from the GitHub repo:
+You can install `pysb-pkpd` version 0.3.3 with `pip` sourced from the GitHub repo:
 
 ##### with git installed:
 
 Fresh install:
 ```
-pip install git+https://github.com/blakeaw/[email protected].2
+pip install git+https://github.com/blakeaw/[email protected].3
 ```
 Or to upgrade from an older version:
 ```
-pip install --upgrade git+https://github.com/blakeaw/[email protected].2
+pip install --upgrade git+https://github.com/blakeaw/[email protected].3
 ```
 ##### without git installed:
 
 Fresh install:
 ```
-pip install https://github.com/blakeaw/pysb-pkpd/archive/refs/tags/v0.3.2.zip
+pip install https://github.com/blakeaw/pysb-pkpd/archive/refs/tags/v0.3.3.zip
 ```
 Or to upgrade from an older version:
 ```
-pip install --upgrade https://github.com/blakeaw/pysb-pkpd/archive/refs/tags/v0.3.2.zip
+pip install --upgrade https://github.com/blakeaw/pysb-pkpd/archive/refs/tags/v0.3.3.zip
 ```
 ### Manual install
 

src/pysb/pkpd/__init__.py

@@ -5,4 +5,4 @@
 from .macros import *
 from .util import simulate
 
-__version__ = '0.3.2'
+__version__ = '0.3.3'

src/pysb/pkpd/util.py

@@ -37,7 +37,7 @@ def simulate(
         tspan=tspan,
         integrator="lsoda",
     )
-    simulation_result = simulation.run(
+    simulation_result = simulator.run(
         param_values=param_values, initials=initials, num_processors=nprocs
     )
     simulation_trajectory = simulation_result.all