Feature/pixi2

.gitattributes

@@ -41,3 +41,6 @@
 *.pkl filter=lfs diff=lfs merge=lfs -text
 # numpy file format
 *.npy filter=lfs diff=lfs merge=lfs -text
+# GitHub syntax highlighting
+pixi.lock linguist-language=YAML
+

.github/dependabot.yml

@@ -26,3 +26,7 @@ updates:
         #try to group all third party library updates into a single pr
         patterns:
           - "*"
+  - package-ecosystem: github-actions
+    directory: /
+    schedule:
+      interval: monthly

.github/workflows/ci.yml

@@ -12,39 +12,66 @@ on:
 permissions:
   contents: read
 
-jobs:
 
-  black:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: psf/black@stable
-  ruff:
-    runs-on: ubuntu-latest
-    needs: [black]
-    steps:
-      - uses: actions/checkout@v3
-      - uses: chartboost/ruff-action@v1
-  build:
+jobs:
+  ci:
     runs-on: ubuntu-latest
-    needs: [ruff]
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python 3.10
-      uses: actions/setup-python@v3
-      with:
-        python-version: "3.10"
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        pip install flit
-        flit install --extras test
-    - run: |
-        pylint $(git ls-files '*.py')
-    - name: Test with pytest
-      run: |
-        coverage run -m pytest
-    - name: Upload coverage reports to Codecov
-      uses: codecov/codecov-action@v3
-      env:
-        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Setup Pixi
+        uses: prefix-dev/[email protected]
+        with:
+          pixi-version: v0.22.0
+          cache: true
+          auth-host: prefix.dev
+          auth-token: ${{ secrets.PREFIX_DEV_TOKEN }}
+      - name: Format and lint
+        run: |
+          pixi run fmt
+          pixi run lint 
+      - name: Assert no changes
+        run: |
+            git diff --exit-code     
+      - name: Test
+        run: |
+          pixi run coverage      
+      - name: Upload coverage reports to Codecov
+        uses: codecov/codecov-action@v3
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+# jobs:
+
+
+#   black:
+#     runs-on: ubuntu-latest
+#     steps:
+#       - uses: actions/checkout@v3
+#       - uses: psf/black@stable
+#   ruff:
+#     runs-on: ubuntu-latest
+#     needs: [black]
+#     steps:
+#       - uses: actions/checkout@v3
+#       - uses: chartboost/ruff-action@v1
+#   build:
+#     runs-on: ubuntu-latest
+#     needs: [ruff]
+#     steps:
+#     - uses: actions/checkout@v3
+#     - name: Set up Python 3.10
+#       uses: actions/setup-python@v3
+#       with:
+#         python-version: "3.10"
+#     - name: Install dependencies
+#       run: |
+#         python -m pip install --upgrade pip
+#         pip install flit
+#         flit install --extras test
+#     - run: |
+#         pylint $(git ls-files '*.py')
+#     - name: Test with pytest
+#       run: |
+#         coverage run -m pytest
+

.gitignore

@@ -164,3 +164,7 @@ cython_debug/
 #COLCON
 install/**
 log/**
+# pixi environments
+.pixi
+*.egg-info
+