Kmedoids warm restart implementation (#197)

* Kmedoids warm restart implementation * Added args.Clusterer option for KMedoids * Wrote test for kmedoids warm start * Add intermediate saves option for kmedoids/khybrid --------- Co-authored-by: Justin-J-Miller <[email protected]> Co-authored-by: Justin Miller <[email protected]>
bowman-lab · May 9, 2024 · 61bbfcd · 61bbfcd
1 parent 3b8c23e
commit 61bbfcd
Show file tree

Hide file tree

Showing 12 changed files with 1,190 additions and 451 deletions.
diff --git a/README.md b/README.md
@@ -45,14 +45,15 @@ installed then, from the enspara directory, run:
 ```bash
 pytest
 ```
+By default this runs without MPI. 
 
-If you wish to skip the MPI tests, you can run:
+If you wish to explicitly skip the MPI tests, you can run:
 ```bash
 pytest -m 'not mpi'
 ```
 
 If you want to run the MPI tests, you can run:
 
 ```bash
-mpiexec -n 2 pytests -m 'mpi'
+mpirun -n 2 python -m pytest -m 'mpi' --with-mpi
 ```