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Resolve file not found error when center features path isn't absolute #201

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Resolve file not found error when center features path isn't absolute #201

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15 changes: 11 additions & 4 deletions enspara/apps/cluster.py
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Original file line number Diff line number Diff line change
Expand Up @@ -412,11 +412,18 @@ def write_centers_indices(path, indices):


def write_centers(result, args):
center_features = args.center_features
if args.features:
np.save(args.center_features, result.centers)
np.save(center_features, result.centers)
else:
outdir = os.path.dirname(args.center_features)
logger.info("Saving cluster centers at %s", outdir)
# If the center_features path is absolute, the pickle file ought to
# be written to the abs path, else relative to the current dir
if os.path.isabs(center_features):
outdir = os.path.dirname(center_features)
else:
outdir = os.path.relpath(center_features, '.')

logger.info("Saving cluster centers at %s", center_features)

try:
os.makedirs(outdir)
Expand All @@ -425,7 +432,7 @@ def write_centers(result, args):

centers = load_asymm_frames(result.center_indices, args.trajectories,
args.topologies, args.subsample)
with open(args.center_features, 'wb') as f:
with open(center_features, 'wb') as f:
pickle.dump(centers, f)


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