bam chrom name fix (#68)

* bam chrom name fix
brentp · May 11, 2021 · e591962 · e591962
1 parent cffb7e8
commit e591962
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bwameth.py b/bwameth.py
@@ -380,7 +380,7 @@ def handle_reads(alns, set_as_failed):
 
         # first letter of chrom is 'f' or 'r'
         direction = aln.chrom[0]
-        aln.chrom = aln.chrom.lstrip('fr')
+        aln.chrom = aln.chrom[1:]
 
         if not aln.is_mapped():
             aln.seq = orig_seq