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added additional descriptions for pandasPlus
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brianpenghe authored Dec 14, 2021
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Expand Up @@ -100,3 +100,13 @@ Sometimes `PseudoBulk` profiles are also useful to generate, whether it's the me

The saved model files and also be re-used to predict a new query object in future by `LogisticPrediction`.

## Functions in pandasPlus:
`DF2Ann` converts a dataframe into an anndata object.

`UpSetFromLists` plots an upset plot (barplot of Venn diagram intersections) based on lists of lists.

`show_graph_with_labels` plots an interaction graph using edges to represent connection strength (max at 1, at least 0.9 to be shown).

Dataframe values can also be used to calculate `zscore` and `Ginni` coefficients.

`cellphonedb_n_interaction_Mat` and `cellphonedb_mat_per_interaction` are useful to reformat cellphonedb outputs.

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