Memory-efficient posterior generation #65
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# Package for PyPI | |
name: 'packaging' | |
on: pull_request | |
jobs: | |
build: | |
runs-on: 'ubuntu-latest' | |
strategy: | |
matrix: | |
python-version: ['3.7'] | |
steps: | |
- name: 'Checkout repo' | |
uses: actions/checkout@v3 | |
- name: 'Set up Python ${{ matrix.python-version }}' | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: 'pip' | |
- name: 'Install packaging software' | |
run: pip install --upgrade setuptools build twine | |
- name: 'Print package versions' | |
run: pip list | |
- name: 'Package code using build' | |
run: python -m build | |
- name: 'Check package using twine' | |
run: python -m twine check dist/* | |
- name: 'Extract branch name' | |
shell: bash | |
run: echo "branch=$(echo ${GITHUB_REF#refs/heads/})" >>$GITHUB_OUTPUT | |
id: extract_branch | |
- name: 'Install from github branch and run a test' | |
run: | | |
pip install pytest git+https://github.com/broadinstitute/CellBender@${{ steps.extract_branch.outputs.branch }} | |
cellbender -v |