Fix CI errors in statspace test suite (#251) #11
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| name: pytest | |
| on: | |
| pull_request: | |
| push: | |
| branches: [main] | |
| paths: | |
| - ".github/workflows/*" | |
| - "pymc_experimental/**" | |
| - "setup.py" | |
| - "pyproject.toml" | |
| - "buildosx" | |
| - "conda-envs/**" | |
| - "codecov.yml" | |
| jobs: | |
| ubuntu: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| floatx: [float64] | |
| python-version: ["3.9"] | |
| test-subset: | |
| - pymc_experimental/tests | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| TEST_SUBSET: ${{ matrix.test-subset }} | |
| PYTENSOR_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=native' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v1 | |
| env: | |
| # Increase this value to reset cache if environment-test.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-py${{matrix.python-version}}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| hashFiles('conda-envs/environment-test.yml') }} | |
| - name: Cache multiple paths | |
| uses: actions/cache@v2 | |
| env: | |
| # Increase this value to reset cache if requirements.txt has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: | | |
| ~/.cache/pip | |
| $RUNNER_TOOL_CACHE/Python/* | |
| ~\AppData\Local\pip\Cache | |
| key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{ | |
| hashFiles('requirements.txt') }} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| mamba-version: "*" | |
| activate-environment: pymc-experimental-test | |
| channel-priority: strict | |
| environment-file: conda-envs/environment-test.yml | |
| python-version: ${{matrix.python-version}} | |
| use-mamba: true | |
| use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | |
| - name: Install pymc-experimental | |
| run: | | |
| conda activate pymc-experimental-test | |
| pip install -e . | |
| python --version | |
| - name: Run tests | |
| run: | | |
| conda activate pymc-experimental-test | |
| python -m pytest -vv --cov=pymc_experimental --cov-append --cov-report=xml --cov-report term --durations=50 $TEST_SUBSET | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| env_vars: TEST_SUBSET | |
| name: ${{ matrix.os }} ${{ matrix.floatx }} | |
| fail_ci_if_error: false | |
| windows: | |
| strategy: | |
| matrix: | |
| os: [windows-latest] | |
| floatx: [float32] | |
| python-version: ["3.11"] | |
| test-subset: | |
| - pymc_experimental/tests | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| TEST_SUBSET: ${{ matrix.test-subset }} | |
| PYTENSOR_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=core2' | |
| defaults: | |
| run: | |
| shell: cmd | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v1 | |
| env: | |
| # Increase this value to reset cache if conda-envs/windows-environment-test.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-py${{matrix.python-version}}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| hashFiles('conda-envs/windows-environment-test.yml') }} | |
| - name: Cache multiple paths | |
| uses: actions/cache@v2 | |
| env: | |
| # Increase this value to reset cache if requirements.txt has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: | | |
| ~/.cache/pip | |
| $RUNNER_TOOL_CACHE/Python/* | |
| ~\AppData\Local\pip\Cache | |
| key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{ | |
| hashFiles('requirements.txt') }} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| mamba-version: "*" | |
| activate-environment: pymc-experimental-test | |
| channel-priority: strict | |
| environment-file: conda-envs/windows-environment-test.yml | |
| python-version: ${{matrix.python-version}} | |
| use-mamba: true | |
| use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | |
| - name: Install pymc-experimental | |
| run: | | |
| conda activate pymc-experimental-test | |
| pip install -e . | |
| python --version | |
| - name: Run tests | |
| # This job uses a cmd shell, therefore the environment variable syntax is different! | |
| # The ">-" in the next line replaces newlines with spaces (see https://stackoverflow.com/a/66809682). | |
| run: >- | |
| conda activate pymc-experimental-test && | |
| python -m pytest -vv --cov=pymc_experimental --cov-append --cov-report=xml --cov-report term --durations=50 %TEST_SUBSET% | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| env_vars: TEST_SUBSET | |
| name: ${{ matrix.os }} ${{ matrix.floatx }} | |
| fail_ci_if_error: false |