napari-segselect

Select a connected component from a membrain-seg segmentation.

Usage

1. Run membrain-seg with the --store-connected-components flag (optional, otherwise connected components will be calculated while opening the segmentation.)
2. Open the segmentation in Napari, find out which component numbers correspond to your feature.
3. Enter these numbers and a feature name in the widget, press run.
4. Save the resulting layer using naparis built-in dialog.
5. Now you have a standalone binary segmentation of your feature of interest.

Installation

You can install napari-segselect via pip:

pip install napari-segselect

Or directly from GitHub:

pip install git+https://github.com/bwmr/napari-segselect.git

License

Distributed under the terms of the BSD-3 license, "napari-segselect" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

This napari plugin was generated with copier using the napari-plugin-template.