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ccrcc_wcm_2022 study #1892

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ccrcc_wcm_2022 study #1892

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c00965a
new study: ccrcc_wcm_2022
alexsigaras Mar 21, 2022
0851814
updated groups to PUBLIC
alexsigaras Mar 21, 2022
e98c9b7
Updated cohort based on feedback in PR
alexsigaras Apr 7, 2022
f6441de
Merge branch 'master' into ccrcc_wcm_2022
alexsigaras Apr 7, 2022
7d23479
Merge branch 'master' into ccrcc_wcm_2022
rmadupuri Jul 6, 2022
b670eba
Merge branch 'master' into ccrcc_wcm_2022
alexsigaras Aug 15, 2023
7662c83
Merge branch 'ccrcc_wcm_2022' of github.com:cBioPortal/datahub
Aug 17, 2023
4c9856e
Adding new public study.
Aug 21, 2023
207569c
Merge branch 'master' into ccrcc_study
rmadupuri Aug 21, 2023
2cdbf7e
Error fix
Aug 21, 2023
5bc1733
Merge branch 'ccrcc_study' of github.com:cBioPortal/datahub into ccrc…
Aug 21, 2023
7d05500
Merge branch 'master' into ccrcc_study
alexsigaras Aug 28, 2023
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Updated cohort based on feedback in PR
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@alexsigaras
alexsigaras committed Apr 7, 2022
commit e98c9b7254a1336872e8ed1370cd90a600cccc97
6 changes: 6 additions & 0 deletions public/ccrcc_wcm_2022/case_lists/cases_cna.txt
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cancer_study_identifier: ccrcc_wcm_2022
stable_id: ccrcc_wcm_2022_cna
case_list_name: Samples with CNA data
case_list_description: Samples with mutation data (67 tumor/normal pair samples)
case_list_category: all_cases_with_cna_data
case_list_ids: WCMC-RCC-036-1 WCMC-RCC-085-1 WCMC-RCC-084-1 WCMC-RCC-084-2 WCMC-RCC-081-1 WCMC-RCC-078-1 WCMC-RCC-077-1 WCMC-RCC-074-1 WCMC-RCC-074-2 WCMC-RCC-069-1 WCMC-RCC-065-1 WCMC-RCC-065-2 WCMC-RCC-060-1 WCMC-RCC-058-1 WCMC-RCC-058-2 WCMC-RCC-057-1 WCMC-RCC-051-1 WCMC-RCC-050-1 WCMC-RCC-050-2 WCMC-RCC-048-1 WCMC-RCC-048-2 WCMC-RCC-047-1 WCMC-RCC-045-1 WCMC-RCC-044-1 WCMC-RCC-043-1 WCMC-RCC-041-1 WCMC-RCC-039-1 WCMC-RCC-036-2 WCMC-RCC-035-1 WCMC-RCC-034-1 WCMC-RCC-033-1 WCMC-RCC-033-2 WCMC-RCC-032-1 WCMC-RCC-030-1 WCMC-RCC-030-2 WCMC-RCC-029-1 WCMC-RCC-029-2 WCMC-RCC-026-1 WCMC-RCC-024-1 WCMC-RCC-023-1 WCMC-RCC-022-1 WCMC-RCC-008-1 WCMC-RCC-008-2 WCMC-RCC-008-3 WCMC-RCC-008-4 WCMC-RCC-019-1 WCMC-RCC-015-1 WCMC-RCC-015-2 WCMC-RCC-015-3 WCMC-RCC-015-4 WCMC-RCC-014-1 WCMC-RCC-013-1 WCMC-RCC-007-1 WCMC-RCC-007-2 WCMC-RCC-007-3 WCMC-RCC-007-4 WCMC-RCC-007-5 WCMC-RCC-007-6 WCMC-RCC-007-7 WCMC-RCC-086-1 WCMC-RCC-010-1 WCMC-RCC-006-1 WCMC-RCC-006-2 WCMC-RCC-006-3 WCMC-RCC-003-1 WCMC-RCC-002-1 WCMC-RCC-001-1
6 changes: 6 additions & 0 deletions public/ccrcc_wcm_2022/case_lists/cases_cnaseq.txt
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cancer_study_identifier: ccrcc_wcm_2022
stable_id: ccrcc_wcm_2022_cnaseq
case_list_name: Samples with mutation and CNA data
case_list_description: Samples with mutation and CNA data (67 tumor/normal pair samples)
case_list_category: all_cases_with_mutation_and_cna_data
case_list_ids: WCMC-RCC-036-1 WCMC-RCC-085-1 WCMC-RCC-084-1 WCMC-RCC-084-2 WCMC-RCC-081-1 WCMC-RCC-078-1 WCMC-RCC-077-1 WCMC-RCC-074-1 WCMC-RCC-074-2 WCMC-RCC-069-1 WCMC-RCC-065-1 WCMC-RCC-065-2 WCMC-RCC-060-1 WCMC-RCC-058-1 WCMC-RCC-058-2 WCMC-RCC-057-1 WCMC-RCC-051-1 WCMC-RCC-050-1 WCMC-RCC-050-2 WCMC-RCC-048-1 WCMC-RCC-048-2 WCMC-RCC-047-1 WCMC-RCC-045-1 WCMC-RCC-044-1 WCMC-RCC-043-1 WCMC-RCC-041-1 WCMC-RCC-039-1 WCMC-RCC-036-2 WCMC-RCC-035-1 WCMC-RCC-034-1 WCMC-RCC-033-1 WCMC-RCC-033-2 WCMC-RCC-032-1 WCMC-RCC-030-1 WCMC-RCC-030-2 WCMC-RCC-029-1 WCMC-RCC-029-2 WCMC-RCC-026-1 WCMC-RCC-024-1 WCMC-RCC-023-1 WCMC-RCC-022-1 WCMC-RCC-008-1 WCMC-RCC-008-2 WCMC-RCC-008-3 WCMC-RCC-008-4 WCMC-RCC-019-1 WCMC-RCC-015-1 WCMC-RCC-015-2 WCMC-RCC-015-3 WCMC-RCC-015-4 WCMC-RCC-014-1 WCMC-RCC-013-1 WCMC-RCC-007-1 WCMC-RCC-007-2 WCMC-RCC-007-3 WCMC-RCC-007-4 WCMC-RCC-007-5 WCMC-RCC-007-6 WCMC-RCC-007-7 WCMC-RCC-086-1 WCMC-RCC-010-1 WCMC-RCC-006-1 WCMC-RCC-006-2 WCMC-RCC-006-3 WCMC-RCC-003-1 WCMC-RCC-002-1 WCMC-RCC-001-1
5 changes: 3 additions & 2 deletions public/ccrcc_wcm_2022/case_lists/cases_sequenced.txt
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cancer_study_identifier: ccrcc_wcm_2022
stable_id: ccrcc_wcm_2022_sequenced
case_list_name: All Sequenced data
case_list_description: All Sequenced data
case_list_name: Samples with mutation data
case_list_description: Samples with mutation data (67 tumor/normal pair samples)
case_list_category: all_cases_with_mutation_data
case_list_ids: WCMC-RCC-036-1 WCMC-RCC-085-1 WCMC-RCC-084-1 WCMC-RCC-084-2 WCMC-RCC-081-1 WCMC-RCC-078-1 WCMC-RCC-077-1 WCMC-RCC-074-1 WCMC-RCC-074-2 WCMC-RCC-069-1 WCMC-RCC-065-1 WCMC-RCC-065-2 WCMC-RCC-060-1 WCMC-RCC-058-1 WCMC-RCC-058-2 WCMC-RCC-057-1 WCMC-RCC-051-1 WCMC-RCC-050-1 WCMC-RCC-050-2 WCMC-RCC-048-1 WCMC-RCC-048-2 WCMC-RCC-047-1 WCMC-RCC-045-1 WCMC-RCC-044-1 WCMC-RCC-043-1 WCMC-RCC-041-1 WCMC-RCC-039-1 WCMC-RCC-036-2 WCMC-RCC-035-1 WCMC-RCC-034-1 WCMC-RCC-033-1 WCMC-RCC-033-2 WCMC-RCC-032-1 WCMC-RCC-030-1 WCMC-RCC-030-2 WCMC-RCC-029-1 WCMC-RCC-029-2 WCMC-RCC-026-1 WCMC-RCC-024-1 WCMC-RCC-023-1 WCMC-RCC-022-1 WCMC-RCC-008-1 WCMC-RCC-008-2 WCMC-RCC-008-3 WCMC-RCC-008-4 WCMC-RCC-019-1 WCMC-RCC-015-1 WCMC-RCC-015-2 WCMC-RCC-015-3 WCMC-RCC-015-4 WCMC-RCC-014-1 WCMC-RCC-013-1 WCMC-RCC-007-1 WCMC-RCC-007-2 WCMC-RCC-007-3 WCMC-RCC-007-4 WCMC-RCC-007-5 WCMC-RCC-007-6 WCMC-RCC-007-7 WCMC-RCC-086-1 WCMC-RCC-010-1 WCMC-RCC-006-1 WCMC-RCC-006-2 WCMC-RCC-006-3 WCMC-RCC-003-1 WCMC-RCC-002-1 WCMC-RCC-001-1
4 changes: 2 additions & 2 deletions public/ccrcc_wcm_2022/data_clinical_sample.txt
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0 ...ccrcc_wcm_2022/meta_mutation_extended.txt → public/ccrcc_wcm_2022/meta_mutations.txt
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2 changes: 1 addition & 1 deletion public/ccrcc_wcm_2022/meta_study.txt
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type_of_cancer: ccrcc
cancer_study_identifier: ccrcc_wcm_2022
name: Clear Cell Renal Cell Carcinoma (Cornell, Molecular Oncology 2022)
description: Whole-exome sequencing of metastatic clear cell renal carcinoma (ccRCC) from 67 tumor/normal pairs from 43 patients.
description: Whole-exome sequencing of metastatic clear cell renal carcinoma (ccRCC) from 67 tumor/normal pairs from 43 patients. Please note that one sample has been excluded from the original cohort as it didn't meet the quality threshold for Somatic Copy Number Analysis (SCNA).
citation: van der Mijn et al. Mol Oncol. 2022
pmid: 35231161
add_global_case_list: true
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