Bioimage.io CI #23
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| name: Bioimage.io CI | |
| concurrency: | |
| group: test-resources | |
| cancel-in-progress: true | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - .github/workflows/bioimageio_ci.yml | |
| inputs: | |
| pending_matrix: | |
| description: 'json encoded gh matrix of pending validations for new or updated resources (default: test on all resources)' | |
| required: true | |
| default: '{"include": [{"resource_id": "**", "version_id": "**"}]}' | |
| type: string | |
| workflow_dispatch: | |
| inputs: | |
| pending_matrix: | |
| description: 'json encoded gh matrix of pending validations for new or updated resources (default: test on all resources)' | |
| required: true | |
| default: '{"include": [{"resource_id": "**", "version_id": "**"}]}' | |
| type: string | |
| jobs: | |
| run: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/checkout@v3 | |
| with: | |
| repository: bioimage-io/collection-bioimage-io | |
| ref: gh-pages | |
| path: bioimageio-gh-pages | |
| - name: Print GitHub Event Context | |
| run: echo "${{ toJson(github.event) }}" | |
| - name: Print pending_matrix | |
| run: echo "Pending Matrix ${{ github.event.inputs.pending_matrix }}" | |
| - name: Setup Maven Action | |
| uses: stCarolas/[email protected] | |
| with: | |
| java-version: 11 | |
| maven-version: 3.9.5 | |
| - name: Build with Maven | |
| run: mvn clean install | |
| - name: Generate Classpath (Unix) | |
| run: echo "CLASSPATH=$(mvn -q exec:exec -Dexec.executable=echo -Dexec.args='%classpath'):target/classes" >> $GITHUB_ENV | |
| - name: test with JDLL(Unix) | |
| run: java -cp $CLASSPATH io.bioimage.modelrunner.ci.ContinuousIntegration | |
| - name: Upload test summaries | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: 0.5.5-SNAPSHOT | |
| path: test_summaries | |
| retention-days: 1 | |
| deploy: | |
| needs: [run] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| path: artifacts | |
| - name: merge JDLL test summaries # (they differ by postfix) | |
| run: | | |
| mkdir test_summaries | |
| cp -r artifacts/*/* test_summaries | |
| - name: Deploy test summaries to gh-pages 🚀 | |
| uses: JamesIves/[email protected] | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: test_summaries |