Anatomy of a NIfTI
-Last updated on 2024-02-18 | +
Last updated on 2024-02-28 | Edit this page
@@ -929,8 +929,12 @@OUTPUT<
Key Points
--
-
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
- -
Key PointsBASHKey Points
- -
- BIDS Apps are containerized applications that run on BIDS-compatible +datasets. +
bidsifying your dataset:Key Points
- -
- BIDS is an organizational principle for neuroimaging data. +
- Converting a raw MRI dataset to a BIDS-compatible dataset +streamlines data processing pipelines. +
Key PointsContent from From the scanner to our computer
-Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
Estimated time: 30 minutes
@@ -625,7 +625,7 @@ Converting DICOM to NIfTI
Show me the solution
-
+
Content from Anatomy of a NIfTI
-Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
Estimated time: 25 minutes
@@ -1327,8 +1330,13 @@ OUTPUT<
Key Points
--
-
+
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
@@ -1419,15 +1427,18 @@ bidsifying your dataset:Key Points
--
-
+
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset
+streamlines data processing pipelines.
+
Content from Exploring open MRI datasets
-Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
Estimated time: 45 minutes
@@ -2106,9 +2117,10 @@ Key Points
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
@@ -2201,8 +2213,10 @@ BASHKey Points
--
-
+
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
diff --git a/instructor/anatomy-of-nifti.html b/instructor/anatomy-of-nifti.html
index 81842f4..c23ed80 100644
--- a/instructor/anatomy-of-nifti.html
+++ b/instructor/anatomy-of-nifti.html
@@ -269,7 +269,7 @@
Anatomy of a NIfTI
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -931,8 +931,12 @@ OUTPUT<
Key Points
--
-
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
@@ -994,7 +998,7 @@ Key PointsBASHKey Points
--
-
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
diff --git a/instructor/data-organization-bids.html b/instructor/data-organization-bids.html
index af9f034..0ecde7f 100644
--- a/instructor/data-organization-bids.html
+++ b/instructor/data-organization-bids.html
@@ -344,8 +344,10 @@ bidsifying your dataset:Key Points
--
-
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset
+streamlines data processing pipelines.
+
diff --git a/instructor/key-points.html b/instructor/key-points.html
index 0ae4aa3..774abbb 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -319,23 +319,37 @@
internet.
From the scanner to our computer
--
-
Anatomy of a NIfTI
+
+- MRI can capture anatomical (structural), functional, or diffusion
+features.
+- A number of file formats exist to store neuroimaging data.
+
Anatomy of a NIfTI
--
-
Data organization with BIDS
+
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
Data organization with BIDS
--
-
Exploring open MRI datasets
+
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset
+streamlines data processing pipelines.
+
Exploring open MRI datasets
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
BIDS derivatives
--
-
+
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
diff --git a/instructor/open-mri-datasets.html b/instructor/open-mri-datasets.html
index 12b0c59..9ec2983 100644
--- a/instructor/open-mri-datasets.html
+++ b/instructor/open-mri-datasets.html
@@ -268,7 +268,7 @@
Exploring open MRI datasets
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -914,9 +914,10 @@ PYTHON<
Key Points
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
@@ -979,7 +980,7 @@ Key Points
From the scanner to our computer
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -395,7 +395,7 @@ Converting DICOM to NIfTI
Show me the solution
-
+
@@ -477,7 +479,7 @@ Key Points
internet.
From the scanner to our computer
--
-
Anatomy of a NIfTI
+
+- MRI can capture anatomical (structural), functional, or diffusion
+features.
+- A number of file formats exist to store neuroimaging data.
+
Anatomy of a NIfTI
--
-
Data organization with BIDS
+
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
Data organization with BIDS
--
-
Exploring open MRI datasets
+
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset
+streamlines data processing pipelines.
+
Exploring open MRI datasets
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
BIDS derivatives
--
-
+
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
diff --git a/md5sum.txt b/md5sum.txt
index 60f244a..cad0dc2 100644
--- a/md5sum.txt
+++ b/md5sum.txt
@@ -4,11 +4,11 @@
"config.yaml" "3ef23136064fd3627b556860c2d3040f" "site/built/config.yaml" "2024-02-18"
"index.md" "78d2be0b54fef4ff7252449003cdc44f" "site/built/index.md" "2024-02-18"
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-"episodes/bids-derivatives.md" "3d6954c0364237d1adbd1b64b489e9b0" "site/built/bids-derivatives.md" "2024-02-28"
+"episodes/scanner-to-computer.md" "afb07321796dd3ade62eecf6b512b912" "site/built/scanner-to-computer.md" "2024-02-28"
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+"episodes/data-organization-bids.md" "0b88931c574033a6adad39c34fc340f9" "site/built/data-organization-bids.md" "2024-02-28"
+"episodes/open-mri-datasets.md" "9025db8aad6a5526209f349b43aa10c0" "site/built/open-mri-datasets.md" "2024-02-28"
+"episodes/bids-derivatives.md" "a28d2d7028745132a267f703f7317f98" "site/built/bids-derivatives.md" "2024-02-28"
"instructors/instructor-notes.md" "a59fd3b94c07c3fe3218c054a0f03277" "site/built/instructor-notes.md" "2024-02-18"
"learners/discuss.md" "2758e2e5abd231d82d25c6453d8abbc6" "site/built/discuss.md" "2024-02-18"
"learners/reference.md" "28853696c21dd22dfb883e9c241e95fb" "site/built/reference.md" "2024-02-18"
diff --git a/open-mri-datasets.html b/open-mri-datasets.html
index 85d7dc2..c8a3eec 100644
--- a/open-mri-datasets.html
+++ b/open-mri-datasets.html
@@ -268,7 +268,7 @@
Exploring open MRI datasets
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -912,9 +912,10 @@ PYTHON<
Key Points
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
@@ -977,7 +978,7 @@ Key Points
From the scanner to our computer
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -393,7 +393,7 @@ Converting DICOM to NIfTI
Show me the solution
-
+
@@ -475,7 +477,7 @@ Key Points
Show me the solution
-Content from Anatomy of a NIfTI
-
Last updated on 2024-02-18 | +
Last updated on 2024-02-28 | Edit this page
Estimated time: 25 minutes
@@ -1327,8 +1330,13 @@OUTPUT<
Key Points
--
-
+
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
- -
-
+
- NIfTI image contain a header, which describes the contents, and the +data. +
- The position of the NIfTI data in space is determined by the affine +matrix. +
- NIfTI data is a multi-dimensional array of values. +
bidsifying your dataset:Key Points
- -
-
+
- BIDS is an organizational principle for neuroimaging data. +
- Converting a raw MRI dataset to a BIDS-compatible dataset +streamlines data processing pipelines. +
Content from Exploring open MRI datasets
-
Last updated on 2024-02-18 | +
Last updated on 2024-02-28 | Edit this page
Estimated time: 45 minutes
@@ -2106,9 +2117,10 @@Key Points
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
@@ -2201,8 +2213,10 @@ BASHKey Points
--
-
+
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
- -
-
+
- BIDS Apps are containerized applications that run on BIDS-compatible +datasets. +
Anatomy of a NIfTI
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -931,8 +931,12 @@ OUTPUT<
Key Points
--
-
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
@@ -994,7 +998,7 @@ Key PointsBASHKey Points
--
-
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
diff --git a/instructor/data-organization-bids.html b/instructor/data-organization-bids.html
index af9f034..0ecde7f 100644
--- a/instructor/data-organization-bids.html
+++ b/instructor/data-organization-bids.html
@@ -344,8 +344,10 @@ bidsifying your dataset:Key Points
--
-
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset
+streamlines data processing pipelines.
+
diff --git a/instructor/key-points.html b/instructor/key-points.html
index 0ae4aa3..774abbb 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -319,23 +319,37 @@
internet.
From the scanner to our computer
--
-
Anatomy of a NIfTI
+
+- MRI can capture anatomical (structural), functional, or diffusion
+features.
+- A number of file formats exist to store neuroimaging data.
+
Anatomy of a NIfTI
--
-
Data organization with BIDS
+
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
Data organization with BIDS
--
-
Exploring open MRI datasets
+
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset
+streamlines data processing pipelines.
+
Exploring open MRI datasets
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
BIDS derivatives
--
-
+
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
diff --git a/instructor/open-mri-datasets.html b/instructor/open-mri-datasets.html
index 12b0c59..9ec2983 100644
--- a/instructor/open-mri-datasets.html
+++ b/instructor/open-mri-datasets.html
@@ -268,7 +268,7 @@
Exploring open MRI datasets
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -914,9 +914,10 @@ PYTHON<
Key Points
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
@@ -979,7 +980,7 @@ Key Points
From the scanner to our computer
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -395,7 +395,7 @@ Converting DICOM to NIfTI
Show me the solution
-
+
@@ -477,7 +479,7 @@ Key Points
internet.
From the scanner to our computer
--
-
Anatomy of a NIfTI
+
+- MRI can capture anatomical (structural), functional, or diffusion
+features.
+- A number of file formats exist to store neuroimaging data.
+
Anatomy of a NIfTI
--
-
Data organization with BIDS
+
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
Data organization with BIDS
--
-
Exploring open MRI datasets
+
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset
+streamlines data processing pipelines.
+
Exploring open MRI datasets
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
BIDS derivatives
--
-
+
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
diff --git a/md5sum.txt b/md5sum.txt
index 60f244a..cad0dc2 100644
--- a/md5sum.txt
+++ b/md5sum.txt
@@ -4,11 +4,11 @@
"config.yaml" "3ef23136064fd3627b556860c2d3040f" "site/built/config.yaml" "2024-02-18"
"index.md" "78d2be0b54fef4ff7252449003cdc44f" "site/built/index.md" "2024-02-18"
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diff --git a/open-mri-datasets.html b/open-mri-datasets.html
index 85d7dc2..c8a3eec 100644
--- a/open-mri-datasets.html
+++ b/open-mri-datasets.html
@@ -268,7 +268,7 @@
Exploring open MRI datasets
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -912,9 +912,10 @@ PYTHON<
Key Points
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
@@ -977,7 +978,7 @@ Key Points
From the scanner to our computer
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -393,7 +393,7 @@ Converting DICOM to NIfTI
Show me the solution
-
+
@@ -475,7 +477,7 @@ Key Points
Anatomy of a NIfTI
-Last updated on 2024-02-18 | +
Last updated on 2024-02-28 | Edit this page
@@ -931,8 +931,12 @@OUTPUT<
Key Points
--
-
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
- -
Key PointsBASHKey Points
- -
- BIDS Apps are containerized applications that run on BIDS-compatible +datasets. +
bidsifying your dataset:Key Points
- -
- BIDS is an organizational principle for neuroimaging data. +
- Converting a raw MRI dataset to a BIDS-compatible dataset +streamlines data processing pipelines. +
internet.
From the scanner to our computer
--
-
Anatomy of a NIfTI
+
+- MRI can capture anatomical (structural), functional, or diffusion
+features.
+- A number of file formats exist to store neuroimaging data.
+
Anatomy of a NIfTI
--
-
Data organization with BIDS
+
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
Data organization with BIDS
--
-
Exploring open MRI datasets
+
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset
+streamlines data processing pipelines.
+
Exploring open MRI datasets
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
BIDS derivatives
--
-
+
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
From the scanner to our computer
-
- -
Anatomy of a NIfTI
+-
+
- MRI can capture anatomical (structural), functional, or diffusion +features. +
- A number of file formats exist to store neuroimaging data. +
Anatomy of a NIfTI
-
- -
Data organization with BIDS
+-
+
- NIfTI image contain a header, which describes the contents, and the +data. +
- The position of the NIfTI data in space is determined by the affine +matrix. +
- NIfTI data is a multi-dimensional array of values. +
Data organization with BIDS
-
- -
Exploring open MRI datasets
+-
+
- BIDS is an organizational principle for neuroimaging data. +
- Converting a raw MRI dataset to a BIDS-compatible dataset +streamlines data processing pipelines. +
Exploring open MRI datasets
-
-
- BIDS is an organizational principle for neuroimaging data +
- Public neuroimaging BIDS-compatible data repositories allow for +pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of -BIDS-formatted neuroimaging data +BIDS-formatted neuroimaging data.
BIDS derivatives
-
- -
Exploring open MRI datasets
-Last updated on 2024-02-18 | +
Last updated on 2024-02-28 | Edit this page
@@ -914,9 +914,10 @@PYTHON<
Key Points
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
- BIDS is an organizational principle for neuroimaging data +
- Public neuroimaging BIDS-compatible data repositories allow for +pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of -BIDS-formatted neuroimaging data +BIDS-formatted neuroimaging data.
Key Points
From the scanner to our computer
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -395,7 +395,7 @@ Converting DICOM to NIfTI
Show me the solution
-
+
@@ -477,7 +479,7 @@ Key Points
internet.
From the scanner to our computer
--
-
Anatomy of a NIfTI
+
+- MRI can capture anatomical (structural), functional, or diffusion
+features.
+- A number of file formats exist to store neuroimaging data.
+
Anatomy of a NIfTI
--
-
Data organization with BIDS
+
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
Data organization with BIDS
--
-
Exploring open MRI datasets
+
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset
+streamlines data processing pipelines.
+
Exploring open MRI datasets
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
BIDS derivatives
--
-
+
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
diff --git a/md5sum.txt b/md5sum.txt
index 60f244a..cad0dc2 100644
--- a/md5sum.txt
+++ b/md5sum.txt
@@ -4,11 +4,11 @@
"config.yaml" "3ef23136064fd3627b556860c2d3040f" "site/built/config.yaml" "2024-02-18"
"index.md" "78d2be0b54fef4ff7252449003cdc44f" "site/built/index.md" "2024-02-18"
"episodes/before-we-start.md" "1e98940ca00552578a4e3b31e6064999" "site/built/before-we-start.md" "2024-02-18"
-"episodes/scanner-to-computer.md" "f902635173062e7de5b0a36f4d947dd4" "site/built/scanner-to-computer.md" "2024-02-18"
-"episodes/anatomy-of-nifti.md" "b305edc5b76d6aa7697c2046894c7a4e" "site/built/anatomy-of-nifti.md" "2024-02-18"
-"episodes/data-organization-bids.md" "cc4efbaa3f22d43a68ef8ebb375d937e" "site/built/data-organization-bids.md" "2024-02-28"
-"episodes/open-mri-datasets.md" "d1328f9baba7d4b77437580c9de91a33" "site/built/open-mri-datasets.md" "2024-02-18"
-"episodes/bids-derivatives.md" "3d6954c0364237d1adbd1b64b489e9b0" "site/built/bids-derivatives.md" "2024-02-28"
+"episodes/scanner-to-computer.md" "afb07321796dd3ade62eecf6b512b912" "site/built/scanner-to-computer.md" "2024-02-28"
+"episodes/anatomy-of-nifti.md" "ad2d3e0d3d72099be13a22a1e85a1cdc" "site/built/anatomy-of-nifti.md" "2024-02-28"
+"episodes/data-organization-bids.md" "0b88931c574033a6adad39c34fc340f9" "site/built/data-organization-bids.md" "2024-02-28"
+"episodes/open-mri-datasets.md" "9025db8aad6a5526209f349b43aa10c0" "site/built/open-mri-datasets.md" "2024-02-28"
+"episodes/bids-derivatives.md" "a28d2d7028745132a267f703f7317f98" "site/built/bids-derivatives.md" "2024-02-28"
"instructors/instructor-notes.md" "a59fd3b94c07c3fe3218c054a0f03277" "site/built/instructor-notes.md" "2024-02-18"
"learners/discuss.md" "2758e2e5abd231d82d25c6453d8abbc6" "site/built/discuss.md" "2024-02-18"
"learners/reference.md" "28853696c21dd22dfb883e9c241e95fb" "site/built/reference.md" "2024-02-18"
diff --git a/open-mri-datasets.html b/open-mri-datasets.html
index 85d7dc2..c8a3eec 100644
--- a/open-mri-datasets.html
+++ b/open-mri-datasets.html
@@ -268,7 +268,7 @@
Exploring open MRI datasets
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -912,9 +912,10 @@ PYTHON<
Key Points
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
@@ -977,7 +978,7 @@ Key Points
From the scanner to our computer
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -393,7 +393,7 @@ Converting DICOM to NIfTI
Show me the solution
-
+
@@ -475,7 +477,7 @@ Key Points
From the scanner to our computer
-Last updated on 2024-02-18 | +
Last updated on 2024-02-28 | Edit this page
@@ -395,7 +395,7 @@Converting DICOM to NIfTI
Show me the solution
-
+
@@ -477,7 +479,7 @@ Key Points
internet.
From the scanner to our computer
--
-
Anatomy of a NIfTI
+
+- MRI can capture anatomical (structural), functional, or diffusion
+features.
+- A number of file formats exist to store neuroimaging data.
+
Anatomy of a NIfTI
--
-
Data organization with BIDS
+
+- NIfTI image contain a header, which describes the contents, and the
+data.
+- The position of the NIfTI data in space is determined by the affine
+matrix.
+- NIfTI data is a multi-dimensional array of values.
+
Data organization with BIDS
--
-
Exploring open MRI datasets
+
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset
+streamlines data processing pipelines.
+
Exploring open MRI datasets
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
BIDS derivatives
--
-
+
+- BIDS Apps are containerized applications that run on BIDS-compatible
+datasets.
+
From the scanner to our computer
-
- -
Anatomy of a NIfTI
+-
+
- MRI can capture anatomical (structural), functional, or diffusion +features. +
- A number of file formats exist to store neuroimaging data. +
Anatomy of a NIfTI
-
- -
Data organization with BIDS
+-
+
- NIfTI image contain a header, which describes the contents, and the +data. +
- The position of the NIfTI data in space is determined by the affine +matrix. +
- NIfTI data is a multi-dimensional array of values. +
Data organization with BIDS
-
- -
Exploring open MRI datasets
+-
+
- BIDS is an organizational principle for neuroimaging data. +
- Converting a raw MRI dataset to a BIDS-compatible dataset +streamlines data processing pipelines. +
Exploring open MRI datasets
-
-
- BIDS is an organizational principle for neuroimaging data +
- Public neuroimaging BIDS-compatible data repositories allow for +pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of -BIDS-formatted neuroimaging data +BIDS-formatted neuroimaging data.
BIDS derivatives
-
- -
-
+
- BIDS Apps are containerized applications that run on BIDS-compatible +datasets. +
Exploring open MRI datasets
-Last updated on 2024-02-18 | +
Last updated on 2024-02-28 | Edit this page
@@ -912,9 +912,10 @@PYTHON<
Key Points
-- BIDS is an organizational principle for neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for
+pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of
-BIDS-formatted neuroimaging data
+BIDS-formatted neuroimaging data.
- BIDS is an organizational principle for neuroimaging data +
- Public neuroimaging BIDS-compatible data repositories allow for +pulling data easily.
- PyBIDS is a Python-based tool that allows for easy exploration of -BIDS-formatted neuroimaging data +BIDS-formatted neuroimaging data.
Key Points
From the scanner to our computer
- Last updated on 2024-02-18 |
+
Last updated on 2024-02-28 |
Edit this page
@@ -393,7 +393,7 @@ Converting DICOM to NIfTI
Show me the solution
-
+
@@ -475,7 +477,7 @@ Key Points
From the scanner to our computer
-Last updated on 2024-02-18 | +
Last updated on 2024-02-28 | Edit this page
@@ -393,7 +393,7 @@