Merge pull request #46 from jhlegarreta/AddKeyPointsToEpisodes

ENH: Add keypoints to episodes
carpentries-incubator · Feb 28, 2024 · ba37d8c · ba37d8c
2 parents 7d65f13 + 5e9ff4d
commit ba37d8c
Show file tree

Hide file tree

Showing 5 changed files with 14 additions and 6 deletions.
diff --git a/episodes/anatomy-of-nifti.md b/episodes/anatomy-of-nifti.md
@@ -548,7 +548,10 @@ This is a key component to reproducible analysis and so we'll spend a bit of tim
 
 :::::::::::::::::::::::::::::::::::::::: keypoints
 
-- 
+- NIfTI image contain a header, which describes the contents, and the data.
+- The position of the NIfTI data in space is determined by the affine matrix.
+- NIfTI data is a multi-dimensional array of values.
+
 ::::::::::::::::::::::::::::::::::::::::::::::::::
 
 
diff --git a/episodes/bids-derivatives.md b/episodes/bids-derivatives.md
@@ -57,7 +57,8 @@ singularity run --cleanenv \
 
 :::::::::::::::::::::::::::::::::::::::: keypoints
 
-- 
+- BIDS Apps are containerized applications that run on BIDS-compatible datasets.
+
 ::::::::::::::::::::::::::::::::::::::::::::::::::
 
 
diff --git a/episodes/data-organization-bids.md b/episodes/data-organization-bids.md
@@ -44,7 +44,9 @@ Using the same structure for all of your studies will allow you to easily reuse
 
 :::::::::::::::::::::::::::::::::::::::: keypoints
 
-- 
+- BIDS is an organizational principle for neuroimaging data.
+- Converting a raw MRI dataset to a BIDS-compatible dataset streamlines data processing pipelines.
+
 ::::::::::::::::::::::::::::::::::::::::::::::::::
 
 
diff --git a/episodes/open-mri-datasets.md b/episodes/open-mri-datasets.md
@@ -198,8 +198,8 @@ df.head()
 
 :::::::::::::::::::::::::::::::::::::::: keypoints
 
-- BIDS is an organizational principle for neuroimaging data
-- PyBIDS is a Python-based tool that allows for easy exploration of BIDS-formatted neuroimaging data
+- Public neuroimaging BIDS-compatible data repositories allow for pulling data easily.
+- PyBIDS is a Python-based tool that allows for easy exploration of BIDS-formatted neuroimaging data.
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
 

diff --git a/episodes/scanner-to-computer.md b/episodes/scanner-to-computer.md
@@ -110,7 +110,9 @@ dcm2niix -z y -o ../data/dicom_examples/nii ../data/dicom_examples/0219191_mystu
 
 :::::::::::::::::::::::::::::::::::::::: keypoints
 
-- 
+- MRI can capture anatomical (structural), functional, or diffusion features.
+- A number of file formats exist to store neuroimaging data.
+
 ::::::::::::::::::::::::::::::::::::::::::::::::::