[WIP] Add Siegetank support

[jhprinz]

No description provided.

[jhprinz]

So, I will add a simple siegetank support for project munging. This will

• use a list of user/target tokens to download and sync the streams to a predefined all-atoms folder (I think this part is different from FAH, since this is done automatically by FAH)
• retrieve .pdb file from the tag of the target
• merge the single files to one big files (equivalent to fahmunge.automation.merge_fah_trajectories) : this already exists in fah.py
• strip water and store in munged folder

Suggestions?

[kyleabeauchamp]

Maybe add an option for specifying a local version of the PDB file?

[jchodera]

Maybe add an option for specifying a local version of the PDB file?

We should upload PDB files for all our SiegeTank projects, or this is going to become a nightmare.

[jhprinz]

So far I think that the .pdb are added as a tag at least in our scripts. Should be place these somewhere in the folder structure see #6
Once we have a set of scripts that allow easy adding streams in our folderstructure we can include adding a pdb automatically

[kyleabeauchamp]

Closing this for now, as siegetank is stalled