Add prefer-deletion-insertion option to coding-dna #120
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nokara26
commented
Feb 6, 2025
| "NM_001281494:c.3096-31_3096-8delAAACTTTTTTTTTTTTTTTTTTAAinsTTAAAAAAAAAAAAAAAAAAGTTT" | ||
| "NM_025133:c.*1347_*1370delTTAAAAAAAAAAAAAAAAAAGTTTinsAAACTTTTTTTTTTTTTTTTTTAA" | ||
| "NM_001190274:c.*1347_*1370delTTAAAAAAAAAAAAAAAAAAGTTTinsAAACTTTTTTTTTTTTTTTTTTAA") | ||
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default(prefer-deletion-insertion? false)
varity/test/varity/vcf_to_hgvs_test.clj
Lines 116 to 123 in 4847fa7
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Resolve #94
I added prefer-deletion-insertion option for coding-dna inversion.
I think repeat sequences can be converted to insertion or deletion, but cannot be converted to indel.