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{u'Records': [{u'eventVersion': u'2.0', u'eventTime': u'2016-10-24T23:43:56.131Z', u'requestParameters': {u'sourceIPAddress': u'71.203.118.93'}, u's3': {u'configurationId': u'tf-s3-lambda-20161024145130057031816mjv', u'object': {u'eTag': u'5837a3bda61ff120afd4c352774d286f', u'sequencer': u'00580E9CBC0DE80DD2', u'key': u'data/CA4PExc1000.csv', u'size': 1850}, u'bucket': {u'arn': u'arn:aws:s3:::source_bvc_files', u'name': u'source_bvc_files', u'ownerIdentity': {u'principalId': u'A1H0DJEM19Y0K2'}}, u's3SchemaVersion': u'1.0'}, u'responseElements': {u'x-amz-id-2': u'nCOtO1sXZGDADX14cerU9TFmLzF68mbhQoicx8uGiQ8UTWD/1bUqGgnH5H5Vn6q8FNRetriQFuw=', u'x-amz-request-id': u'D1F921C4C6BBF976'}, u'awsRegion': u'us-east-1', u'eventName': u'ObjectCreated:Put', u'userIdentity': {u'principalId': u'AWS:AIDAIHCYA4J546IECO44E'}, u'eventSource': u'aws:s3'}]} | ||
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from __future__ import print_function | ||
import csv | ||
import os | ||
import sys | ||
import uuid | ||
import ntpath | ||
import boto3 | ||
import logging | ||
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s3_client = boto3.client("s3") | ||
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logger = logging.getLogger() | ||
logger.setLevel(logging.INFO) | ||
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def create_dirs(path): | ||
dir = os.path.dirname(path) | ||
if not os.path.exists(dir): | ||
os.makedirs(dir) | ||
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def analyze_data(input_file_path, output_file_path, file_name): | ||
fieldnames = ["wavelength", "intensity"] | ||
with open(input_file_path) as input_file: | ||
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data = csv.DictReader(input_file, fieldnames=fieldnames) | ||
logger.info("PA-1: data, %s", data) | ||
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max_intensity = None | ||
max_wavelength = None | ||
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# Find max intensity | ||
for row in data: | ||
intensity = float(row["intensity"]) | ||
if max_intensity == None or max_intensity < intensity: | ||
max_intensity = intensity | ||
max_wavelength = int(row["wavelength"]) | ||
logger.info("PA-2: max_intensity, max_wavelength %s %s", max_intensity, max_wavelength) | ||
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if max_intensity: | ||
max_values = { "concentration": int(file_name[7:-4]), "wavelength": max_wavelength, "intensity": max_intensity } | ||
#max_values = { "wavelength": max_wavelength, "intensity": max_intensity } | ||
logger.info("PA-3: found max values for intensity, wavelength %s %s", max_intensity, max_wavelength) | ||
out_field_names = max_values.keys() | ||
with open(output_file_path, "wb") as output_file: | ||
logger.info("PA-4: writing max values for intensity, wavelength %s", max_values) | ||
writer = csv.DictWriter(output_file, fieldnames = out_field_names) | ||
writer.writerow(max_values) | ||
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def handle(event, context): | ||
for record in event['Records']: | ||
logger.info("PY-1: Event, Context %s, %s", event, context) | ||
bucket = record['s3']['bucket']['name'] | ||
key = record['s3']['object']['key'] | ||
logger.info("PY-2: bucket_name %s", bucket) | ||
logger.info("PY-3: key %s", key) | ||
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download_path = '/tmp/{}{}'.format(uuid.uuid4(), key) | ||
create_dirs(download_path) | ||
upload_path = '/tmp/analyzed-{}'.format(key) | ||
create_dirs(upload_path) | ||
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object_name = os.path.basename(download_path) | ||
logger.info("PY-4: downloaded location and filename: %s %s", download_path, object_name) | ||
logger.info("PY-4: upload location: %s", upload_path) | ||
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s3_client.download_file(bucket, key, download_path) | ||
analyze_data(download_path, upload_path, object_name) | ||
logger.info("PY-5: uploading file to S3 (path, bucket, key) %s %s %s", upload_path, '{}analyzed'.format(bucket), key) | ||
s3_client.upload_file(upload_path, '{}analyzed'.format(bucket), key) | ||
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