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Merged fix proper nesting changes and fix timers #225

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merged 8 commits into from
Sep 29, 2016

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rjleveque
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Combination of mjberger/fixProperNesting and mjberger/fixTimers, with merges from recent changes to master.

Travis tests might not pass until clawpack/amrclaw#174 is merged and clawpack/clawpack updated.

Replaces #223.

mjberger and others added 8 commits May 2, 2016 18:25
* master: (69 commits)
  arcgis/qgis does not read header properly with xlower,ylower - needs keywords xllcorner,yllcorner
  added line2kml, poly2kml and improved several other tools
  Turn on landfal time display for test
  Remove old format statements
  Minor multilayer makefile fixes
  Add relative landfall time output
  Update data locations
  Fix level field width
  Add set_storm to initialization routines
  waves and s declared with wrong dimensions in qad - not used in qad but passed in to rpn2 and could cause problems there
  changed default Z_format in Topography.write
  removed unused regression_data file in tests/bowl_slosh
  cleaned up tests/dtopo1 to eliminate depricated topoNwriter functions and fix maketopo.py to run same problem as regression_tests.py and fix out of date setplot.py
  modify tests/storm_surge/regression_tests.py to use modified topotools with Z_format
  need to specify Z_format also in regression_tests.py
  specify Z_format to create same topo file as previously with new topography.write
  add parameter coarsen to Topography.crop to allow coarsening of a grid by sampling every  points, defaults to 1. Also allow filter_region=None to use entire region when coarsening.
  modify examples/tsunami/bowl*/maketopo.py to explicitly use Topography rather than e.g. topo2writer, which should be deprecated, and changed output format for backward compatibility
  modify Topography.write method to 1) have topo_type as second argument, same as read, rather than third, and 2) write with format 9.3f by default for smaller files, with new parameter Z_format to change. Also modified test problems for backward compatibility
  give etopo file_name extension asc rather than tt3 since header is in asc form.
  ...
…ProperNesting

* mjberger/fixTimers:
  fixed timers: deleted some, modified some. GOES WITH AMRCLAW fixTimers branch
…ProperNesting

* mjberger/fixTimers:
  removed unused variable
  had left some setauxTimers in - removed them
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mandli commented Sep 24, 2016

You may need to do a super-repository commit to get this all to pass the tests.

rjleveque added a commit to rjleveque/clawpack that referenced this pull request Sep 24, 2016
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rjleveque commented Sep 24, 2016

Oops put comment in wrong PR so removing.

rjleveque added a commit to clawpack/clawpack that referenced this pull request Sep 24, 2016
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mandli commented Sep 24, 2016

We did merge in a different way to store gauge files (clawpack/clawutil#102), maybe that has something to do with it?

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mandli commented Sep 27, 2016

Not sure where this stands now, can we merge it in?

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Randy was working on this friday - the two are somehow out of sync.

— Marsha

On Sep 27, 2016, at 5:09 PM, Kyle Mandli [email protected] wrote:

Not sure where this stands now, can we merge it in?


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mandli commented Sep 27, 2016

This is out of sync?

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They are out of sync only because amrclaw has had things merged but not yet geoclaw (this PR). But I updated clawpack/clawpack after amrclaw and the Travis tests are now passing on this PR so I think it can be merged in.

@mandli mandli merged commit 64504ed into clawpack:master Sep 29, 2016
@rjleveque rjleveque deleted the test_merge_fixProperNesting branch October 1, 2016 20:18
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3 participants