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gdb, add build/push container action, misc improvements (#21)
* Include GNU debugger `gdb` to `mixer.sif`. Fixes #20 * rebuilt mixer.sif container * regressed build for westmere architecture * rebuilt container for westmere arch * update installer scripts, add build action * path * tar version * bump Python=3.10 * update plink binaries * updating docs * Add opencontainers labels * use mixer_sif namespace for oras push * no quad * remove -mfpmath=sse flag * test -march=x86_64 -mfpmath=sse flags * dash * roll back edits * documentation for Docker image * documentation * roll back mixer build * updated changelog * trigger on main branch and tags updates only * edit path
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,87 @@ | ||
| name: container-build-push | ||
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| on: | ||
| push: | ||
| branches: | ||
| - 'main' | ||
| tags: | ||
| - "v*.*.*" | ||
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| jobs: | ||
| docker: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Docker meta | ||
| id: meta | ||
| uses: docker/metadata-action@v5 | ||
| with: | ||
| # list of Docker images to use as base name for tags | ||
| images: | | ||
| ghcr.io/${{ github.repository_owner }}/mixer | ||
| # generate Docker tags based on the following events/attributes | ||
| tags: | | ||
| type=schedule | ||
| type=ref,event=branch | ||
| type=ref,event=pr | ||
| type=semver,pattern={{version}} | ||
| type=semver,pattern={{major}}.{{minor}} | ||
| type=semver,pattern={{major}} | ||
| type=sha | ||
| type=raw,value=latest,enable={{is_default_branch}} | ||
| - name: Set up QEMU | ||
| uses: docker/setup-qemu-action@v3 | ||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@v3 | ||
| - name: Login to GitHub Container Registry | ||
| if: github.event_name != 'pull_request' | ||
| uses: docker/login-action@v3 | ||
| with: | ||
| registry: ghcr.io | ||
| username: ${{ github.repository_owner }} | ||
| password: ${{ secrets.GITHUB_TOKEN }} | ||
| - name: Build and push | ||
| uses: docker/build-push-action@v5 | ||
| with: | ||
| context: "{{defaultContext}}:src" | ||
| push: ${{ github.event_name != 'pull_request' }} | ||
| tags: ${{ steps.meta.outputs.tags }} | ||
| labels: ${{ steps.meta.outputs.labels }} | ||
| file: | ||
| ./dockerfiles/mixer/Dockerfile | ||
| platforms: linux/amd64 | ||
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| build-apptainer-container: | ||
| needs: docker | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| contents: read | ||
| packages: write | ||
| name: Build Apptainer Container | ||
| steps: | ||
| - name: Check out code for the container builds | ||
| uses: actions/checkout@v4 | ||
| - name: Docker meta | ||
| id: meta | ||
| uses: docker/metadata-action@v5 | ||
| with: | ||
| images: | | ||
| ghcr.io/${{ github.repository_owner }}/mixer | ||
| tags: | | ||
| type=semver,pattern={{version}} | ||
| type=ref,event=branch | ||
| type=sha | ||
| type=raw,value=latest,enable={{is_default_branch}} | ||
| - name: Build and push Apptainer container | ||
| run: | | ||
| tags="${{ steps.meta.outputs.tags }}" | ||
| csv_tags=$(printf "%s\n" "$tags" | awk -F: 'NR==1{printf "%s,", $0; next} {printf "%s,", $NF}' | sed 's/,$//') | ||
| IFS= read -r first_tag <<EOF | ||
| $tags | ||
| EOF | ||
| push_tags="$(printf $csv_tags | sed -e "s/mixer/mixer_sif/g")" | ||
| echo ${{ secrets.GITHUB_TOKEN }} | oras login --username ${{ github.repository_owner }} --password-stdin ghcr.io | ||
| docker pull kaczmarj/apptainer:latest | ||
| docker run --rm --privileged -v $(pwd):/work kaczmarj/apptainer build mixer.sif docker://"$first_tag" | ||
| oras push "$push_tags" mixer.sif | ||
| rm mixer.sif | ||
| shell: sh |
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|---|---|---|
| @@ -1 +1,6 @@ | ||
| .DS_Store | ||
| .DS_Store | ||
| .bash_history | ||
| usecases/partial.* | ||
| usecases/shared.* | ||
| usecases/unique.* | ||
| usecases/.ipython |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,13 @@ | ||
| all: mixer.sif | ||
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| %.sif: dockerfiles/%/Dockerfile | ||
| docker build -t $* -f dockerfiles/$*/Dockerfile . && scripts/convert_docker_image_to_singularity.sh $* | ||
| docker build -t $* -f dockerfiles/$*/Dockerfile . && \ | ||
| scripts/convert_docker_image_to_singularity.sh $* && \ | ||
| scripts/move_singularity_file.sh $* | ||
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| # Example commands executed by this make file | ||
| # | ||
| # Run "make hello.sif" will trigger this: | ||
| # docker build -t hello -f dockerfiles/hello/Dockerfile . && scripts/convert_docker_image_to_singularity.sh hello # produces hello.sif | ||
| # | ||
| # Run "make mixer.sif" will trigger this: | ||
| # docker build -t mixer -f dockerfiles/mixer/Dockerfile . && \ | ||
| # scripts/convert_docker_image_to_singularity.sh mixer && \ # produces mixer.sif | ||
| # scripts/move_singularity_file.sh mixer # moves mixer.sif to the <mixer>/singularity directory |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| #!/bin/sh | ||
| set -euo pipefail | ||
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| cd /tools | ||
| wget https://boostorg.jfrog.io/artifactory/main/release/1.69.0/source/boost_1_69_0.tar.gz | ||
| tar -xzvf boost_1_69_0.tar.gz && cd boost_1_69_0 | ||
| ./bootstrap.sh --with-libraries=program_options,filesystem,system,date_time | ||
| ./b2 --clean && ./b2 --j12 -a |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,9 @@ | ||
| #!/bin/sh | ||
| set -euo pipefail | ||
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| curl -sSL https://github.com/conda-forge/miniforge/releases/download/24.3.0-0/Mambaforge-24.3.0-0-$(uname)-$(uname -m).sh -o /tmp/mambaforge.sh \ | ||
| && mkdir /root/.conda \ | ||
| && bash /tmp/mambaforge.sh -bfp /usr/local \ | ||
| && rm -rf /tmp/mambaforge.sh | ||
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| export PATH=$PATH:/opt/conda/bin |
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