v0.4.0

v0.4.0 (2019-07-31)

Diff since v0.3.9

Merged pull requests:

• fix: remove package calls from viva script (#72) (fernandogelin)
• fix(build): reset and add rm again (#71) (fernandogelin)
• fix(build): rm symlink before creating a new one to avoid break (#70) (fernandogelin)
• docs(readme): update readme (#69) (fernandogelin)
• Develop (#68) (fernandogelin)

v0.3.9

v0.3.9 (2019-07-27)

Diff since v0.3.8

Merged pull requests:

• Fix compilation errors and rewrite docs (#67) (gtollefson)
• Include instructions on how to add Julia bins to windows path variable (#66) (gtollefson)
• VIVA.ipynb (#65) (gtollefson)
• Update docs for Docker (#64) (gtollefson)

v0.3.8

v0.3.8 (2019-07-18)

Diff since v0.3.7

Merged pull requests:

• Update version number for registrator (#63) (gtollefson)
• Remove Pkg.activate(@__DIR__) from viva script (#62) (gtollefson)
• Develop (#61) (gtollefson)
• docs(clarifyDocsAndAddDockerInstallationToReadme.Md): add docker inst… (#60) (gtollefson)
• New feature and bug fixes (#59) (gtollefson)
• docs(docker): add docs on how to use docker images (#58) (fernandogelin)

v0.3.7

v0.3.7 (2019-05-31)

Diff since v0.3.6

Closed issues:

• add "." to geno_dict() (#56)

Merged pull requests:

• Develop (#57) (fernandogelin)
• Fix header formatting in examples (#55) (gtollefson)
• docs(examples): replace VIVA with viva and fix hyperlinks to genomic … (#54) (gtollefson)

v0.3.6

Fix

• permuted dimensions of sample name labels for input into process_plot_inputs() (516ccbf)

Documentation

• add linux to supported os (028dd9a)
• formatting header (b0b99f3)
• change examples link in readme to latest docs rather than stable (1b8382b)
• changed link in readme directly to examples.md rather than docs because doesn't display properly. fixed links in examples (7f3f108)
• formatting (4ed7500)
• replaced html graphics in examples with png. need to correct syntax for html. just use <filepath syntax (616a2ca)

v0.3.5

Fix

• fix read_depth heatmap color pallete when grouped (85a640a)

Documentation

• added link to examples to readme (d0d0607)
• added complete examples with embedded html graphics for easy introduction to viva use (2b44a0c)
• add installation page to manual. fix hyperlinks in index.md (ba1c721)
• added new coverage shield and removed unnecessary function import in /src/variantvisualization.jl (5c14668)
• add windows appveyor status shield and change lifecycle badge to active (8a9a757)

v0.3.4

Fix

• replaced d7f9f8fa-e687-11e8-2c0b-eb4ab256ef6a with package's metadata-compatible uuid 7f8bf45c-0ad5-53b5-97e6-33c1305e0aa4 (7fd8fc3)

v0.3.3

Fix

• make alias in .bash_profile instead of .bashrc (86f9c77)

Documentation

• mentioned mojave twice (ac4c9d8)
• specify julia >= v1.0 is required (014b095)
• fixed hyperlink to jupyter notebook (8302152)
• editted installation instructions. edit again once package is registered (708c33c)
• removed typo line (d5ae2de)
• readme and various docs edits hyperlinks and typos. also changed manual to viva manual in mkdocs (97e37fc)

v0.3.2

Fix

• removed call to display plot after saving plot (f1264fe)

v0.3.1

Fix

• add julia 1.0 to require (a1f29be)
• added supported os versions (9f7ecd2)

Documentation

• added supported os versions (94a06ba)
• changed formatting of heading (24fd095)
• replaced low resoluton viva logo with 600dpi resolution logo (a6aaa4f)