Adding QIIME2 plugin into FEAST_beta #8
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…into FEAST_beta
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A visualization of the mixing proportions is now included with the QIIME 2 plugin through a FEAST specific barplot function. Although it produces a single stacked bar plot -- it can be split into multiple using the
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Since the file isn't actually structured like a .qza, trying to load it in view.qiime2.org causes that site to explode :) ... naming it like a .tsv is more accurate and hopefully less confusing to users
The presence of these files caused installation errors when installing the FEAST R package from source on a Linux system a few weeks back. My assumption is that these files were built for another system (probably MacOS since leaving these files in during installation seemed to work fine on the Mac system I'm currently using), so removing them (thus forcing recompilation) should make this more cross-platform. Or, uh, something like that. Thanks @gwarmstrong for figuring this out a few weeks back :)
some stuff assumed there was a folder called "q2_FEAST", but it's actually named q2_feast. This doesn't seem to cause problems on mac systems, but it broke the tests on a linux system -- likely due to ways the diff operating systems handle case sensitivity in file/folder names.
Also added some documentation to the top of setup.py explaining a few things about q2-FEAST's installation process. Hopefully the ramblings are helpful ;)
mostly did this so i don't forget this a few months down the line, but might be useful to other folks
Address Linux installation problems, add developer documentation, other small tweaks
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This provides a QIIME2 plugin for the existing FEAST script. This includes tests and a pip installation.
There are multiple inputs:
These inputs can definitely be optimized for easier use in the future but this provides a functional solution for now.