Skip to content

Commit

Permalink
Merge branch 'master' of https://github.com/cparsania/parcutils
Browse files Browse the repository at this point in the history
  • Loading branch information
cparsania committed Apr 19, 2024
2 parents 804e12c + 5c15ed6 commit 786cd3b
Show file tree
Hide file tree
Showing 6 changed files with 52 additions and 0 deletions.
27 changes: 27 additions & 0 deletions R/chip_related.R
Original file line number Diff line number Diff line change
Expand Up @@ -79,7 +79,11 @@ make_parcutils_chip <- function(x,row_ranges){
#' @keywords internal
#' @examples
#' \dontrun{
<<<<<<< HEAD
#' #// TO DO
=======
#' // TO DO
>>>>>>> 5c15ed662e9e47e5e08c1033089c800845d9f9d2
#' }
parcutils_chip <- setClass(Class = "parcutils_chip", contains="RangedSummarizedExperiment")

Expand All @@ -95,7 +99,11 @@ parcutils_chip <- setClass(Class = "parcutils_chip", contains="RangedSummarizedE
#'
#' @examples
#' \dontrun{
<<<<<<< HEAD
#' #// TODO
=======
#' // TODO
>>>>>>> 5c15ed662e9e47e5e08c1033089c800845d9f9d2
#' }
normalised_matrix_to_rpm <- function(x){

Expand Down Expand Up @@ -134,10 +142,17 @@ normalised_matrix_to_rpm <- function(x){
#' @param x a list of the object(s) of {.class normalisedMatrix}.
#' @return a list of the object(s) of {.class normalisedMatrix}.
#' @export
<<<<<<< HEAD
#' @keywords {internal}
#' @examples
#' \dontrun{
#' #// TODO
=======
#'
#' @examples
#' \dontrun{
#' // TODO
>>>>>>> 5c15ed662e9e47e5e08c1033089c800845d9f9d2
#' }
.validate_a_list_of_normalised_matrix <- function(x){

Expand Down Expand Up @@ -199,10 +214,17 @@ normalised_matrix_to_rpm <- function(x){
#'
#' @return a list of GRanges object. Each GRanges object is an output of the function [rtracklayer::import.bw()].
#' @export
<<<<<<< HEAD
#' @keywords {internal}
#' @examples
#' \dontrun{
#' #// TODO
=======
#'
#' @examples
#' \dontrun{
#' // TODO
>>>>>>> 5c15ed662e9e47e5e08c1033089c800845d9f9d2
#' }
.parallel_import_bw_files <- function(dir_path_to_bw_files){

Expand Down Expand Up @@ -247,7 +269,12 @@ normalised_matrix_to_rpm <- function(x){
#'
#' @examples
#' \dontrun{
<<<<<<< HEAD
#' #// TO DO.
=======
#'
#' // TO DO.
>>>>>>> 5c15ed662e9e47e5e08c1033089c800845d9f9d2
#' }
import_topn_bed_features <- function(bed_feature_file,topn = 5000, center = TRUE,...){

Expand Down
6 changes: 6 additions & 0 deletions man/dot-parallel_import_bw_files.Rd

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

6 changes: 6 additions & 0 deletions man/dot-validate_a_list_of_normalised_matrix.Rd

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

5 changes: 5 additions & 0 deletions man/import_topn_bed_features.Rd

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 4 additions & 0 deletions man/normalised_matrix_to_rpm.Rd

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 4 additions & 0 deletions man/parcutils_chip-class.Rd

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

0 comments on commit 786cd3b

Please sign in to comment.