Add: Support for anaconda builds

This changeset adds main() entry points to all csb apps to make them compliant with anaconda's meta.yaml syntax.

csb/apps/bfit.py

@@ -114,6 +114,10 @@ def main(self):
         m.to_pdb(self.args.outfile)
 
 
-
-if __name__ == '__main__':
+def main():
     AppRunner().run()
+
+
+if __name__ == '__main__':
+    main()
+

csb/apps/bfite.py

@@ -109,8 +109,11 @@ def main(self):
             out_ensemble.models.append(model)
 
         out_ensemble.to_pdb(self.args.outfile)
-
 
 
-if __name__ == '__main__':
+def main():
     AppRunner().run()
+
+
+if __name__ == '__main__':
+    main()

csb/apps/buildhmm.py

@@ -297,7 +297,9 @@ def format_structure(self):
         return pdb             
 
 
-
-if __name__ == '__main__':
+def main():
+    AppRunner().run()
 
-    AppRunner().run()    
+
+if __name__ == '__main__':
+    main()

csb/apps/csfrag.py

@@ -533,9 +533,9 @@ def _task(helper, subject, qs, qe, qcs, scs):
         return []
 
 
-
-
-if __name__ == '__main__':
-
+def main():
     AppRunner().run()
-
+
+
+if __name__ == '__main__':
+    main()

csb/apps/embd.py

@@ -275,9 +275,11 @@ def run(self, iterations):
         """
         for i in range(iterations):
             self.run_once()
-
 
 
-if __name__ == '__main__':
-
+def main():
     AppRunner().run()
+
+
+if __name__ == '__main__':
+    main()

csb/apps/helloworld.py

@@ -48,8 +48,11 @@ def main(self):
 
         self.log(text)
         self.log('HW: done.')        
-
 
-if __name__ == '__main__':
+
+def main():
+    AppRunner(sys.argv).run()
 
-    AppRunner(sys.argv).run()        
+
+if __name__ == '__main__':
+    main()

csb/apps/hhfrag.py

@@ -581,10 +581,11 @@ def addall(self, ri):
 
         for i in ri:
             self.add(i)
-
+
+
+def main():
+    AppRunner().run()
 
 
 if __name__ == '__main__':
-
-    AppRunner().run()
-
+    main()

csb/apps/hhsearch.py

@@ -271,9 +271,11 @@ def runmany(self, contexts, workers=mp.cpu_count(), cpu=1):
             pool.terminate()
 
         return results
-
+
+
+def main():
+    AppRunner().run()
 
 
 if __name__ == '__main__':
-
-    AppRunner().run()    
+    main()

csb/apps/precision.py

@@ -313,9 +313,11 @@ def rmsd(target, source, fragments, pdb, save=None):
                 continue
 
     return matches         
-
 
 
-if __name__ == '__main__':
-
+def main():
     AppRunner().run()
+
+
+if __name__ == '__main__':
+    main()

csb/apps/promix.py

@@ -7,7 +7,6 @@
 Reference: Hirsch M, Habeck M. - Bioinformatics. 2008 Oct 1;24(19):2184-92
 """
 
-import sys
 import numpy
 
 import csb.apps
@@ -102,7 +101,10 @@ def main_conformers(self, ensemble, X):
 
             ek.to_pdb(outfile)
 
-if __name__ == '__main__':
-    AppRunner(sys.argv).run()
 
-# vi:expandtab:smarttab:sw=4
+def main():
+    AppRunner().run()
+
+
+if __name__ == '__main__':
+    main()