DAOS-16686 dfuse: Fix overlapping chunk reads. #11014

Workflow file for this run

.github/workflows/linting.yml at 82854c0

	name: Linting

	# Always run on Pull Requests as then these checks can be marked as required.
	on:
	push:
	branches:
	- master
	- 'feature/*'
	- 'release/*'
	pull_request:

	permissions: {}

	jobs:
	# Run isort on the tree.
	# This checks .py files only so misses SConstruct and SConscript files are not checked, rather
	# for these files check them afterwards. The output-filter will not be installed for this part
	# so regressions will be detected but not annotated.
	isort:
	name: Python isort
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
	with:
	ref: ${{ github.event.pull_request.head.sha }}
	- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
	with:
	python-version: '3'
	- uses: isort/isort-action@f14e57e1d457956c45a19c05a89cccdf087846e5 # v1.1.0
	with:
	requirementsFiles: "requirements.txt"
	- name: Run on SConstruct file.
	run: isort --check-only SConstruct
	- name: Run on build files.
	run: find . -name SConscript \| xargs isort --check-only

	shell-check:
	name: ShellCheck
	runs-on: ubuntu-22.04
	steps:
	- name: Checkout code
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
	with:
	ref: ${{ github.event.pull_request.head.sha }}
	- name: Run
	run: sudo apt-get update && sudo apt-get install shellcheck
	- name: Add error parser
	run: echo -n "::add-matcher::ci/shellcheck-matcher.json"
	- name: Run Shellcheck
	# The check will run with this file from the target branch but the code from the PR so
	# test for this file before calling it to prevent failures on PRs where this check is
	# in the target branch but the PR is not updated to include it.
	run: \[ ! -x ci/run_shellcheck.sh \] \|\| ./ci/run_shellcheck.sh

	log-check:
	name: Logging macro checking
	runs-on: ubuntu-22.04
	steps:
	- name: Checkout code
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
	with:
	ref: ${{ github.event.pull_request.head.sha }}
	- name: Check DAOS logging macro use.
	run: ./utils/cq/d_logging_check.py --github src

	ftest-tags:
	name: Ftest tag check
	runs-on: ubuntu-22.04
	steps:
	- name: Checkout code
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
	- name: Check DAOS ftest tags.
	run: \[ ! -x src/tests/ftest/tags.py \] \|\| ./src/tests/ftest/tags.py lint --verbose

	flake8-lint:
	runs-on: ubuntu-22.04
	name: Flake8 check
	steps:
	- name: Check out source repository
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
	with:
	ref: ${{ github.event.pull_request.head.sha }}
	- name: Set up Python environment
	uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
	with:
	python-version: '3'
	- name: Add parser
	run: echo -n "::add-matcher::ci/daos-flake-matcher.json"
	- name: Add whitespace parser
	run: echo -n "::add-matcher::ci/daos-flakew-matcher.json"
	- name: Add error parser
	run: echo -n "::add-matcher::ci/daos-flakee-matcher.json"
	- name: flake8 Lint
	uses: py-actions/flake8@84ec6726560b6d5bd68f2a5bed83d62b52bb50ba # v2.3.0
	with:
	# W503 and W504 are related as they conflict. W503 is the preferred style and all code
	# should be using it now.
	ignore: 'W503'
	exclude: 'src/control/vendor,src/client/pydaos/raw'
	max-line-length: '100'
	- name: flake8 Lint on SCons files.
	uses: py-actions/flake8@84ec6726560b6d5bd68f2a5bed83d62b52bb50ba # v2.3.0
	with:
	ignore: 'F821,W503,F841'
	max-line-length: '100'
	args: '--filename */SConscript, SConstruct'

	doxygen:
	name: Doxygen
	runs-on: ubuntu-22.04
	steps:
	- name: Checkout code
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
	with:
	ref: ${{ github.event.pull_request.head.sha }}
	- name: Install doxygen
	run: sudo apt-get install doxygen
	- name: Add parser
	run: echo -n "::add-matcher::ci/daos-doxygen-matcher.json"
	- name: Run check
	run: doxygen Doxyfile
	- name: 'Upload Artifact'
	uses: actions/upload-artifact@5d5d22a31266ced268874388b861e4b58bb5c2f3 # v4.3.1
	with:
	name: API Documentation
	path: docs/doxygen/html/
	retention-days: 1

	pylint:
	name: Pylint check
	runs-on: ubuntu-22.04
	steps:
	- name: Checkout code
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
	with:
	ref: ${{ github.event.pull_request.head.sha }}
	- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
	with:
	python-version: '3.11'
	- name: Install python packages
	run: python3 -m pip install --requirement requirements.txt
	- name: Install enchant
	run: sudo apt-get update && sudo apt-get -y install python3-enchant
	- name: Show versions
	run: ./utils/cq/daos_pylint.py --version
	- name: Run pylint check.
	run: ./utils/cq/daos_pylint.py --git --output-format github

	codespell:
	name: Codespell
	runs-on: ubuntu-22.04
	steps:
	- name: Checkout code
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
	- name: Install extra python packages
	run: python3 -m pip install --requirement utils/cq/requirements.txt
	- name: Run check
	uses: codespell-project/actions-codespell@3174815d6231f5bdc24dbfb6fc3b8caec73d521c # master
	with:
	skip: ./src/control/vendor,./src/control/go.sum,./.git
	ignore_words_file: ci/codespell.ignores
	builtin: clear,rare,informal,names,en-GB_to_en-US

	clang-format:
	name: Clang Format
	runs-on: ubuntu-22.04
	steps:
	- name: Checkout code
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
	- name: Pull via git
	run: git fetch origin ${{ github.event.pull_request.base.ref }}
	- name: Run check in docker
	uses: ./.github/actions/clang-format
	with:
	target: origin/${{ github.event.pull_request.base.ref }}
	- name: Export changes
	uses: actions/upload-artifact@5d5d22a31266ced268874388b861e4b58bb5c2f3 # v4.3.1
	if: failure()
	with:
	name: format-patch-for-pr-${{ github.event.pull_request.number }}
	path: auto-format-changes.diff

	yaml-lint:
	name: Yamllint check
	runs-on: ubuntu-22.04
	steps:
	- name: Check out source repository
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
	with:
	ref: ${{ github.event.pull_request.head.sha }}
	- name: Set up Python environment
	uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
	with:
	python-version: '3'
	- name: Install extra python packages
	run: python3 -m pip install --requirement utils/cq/requirements.txt
	- name: Run check
	run: yamllint --format github .

	linting-summary:
	name: Linting Summary
	runs-on: ubuntu-22.04
	needs:
	- isort
	- shell-check
	- log-check
	- ftest-tags
	- flake8-lint
	- doxygen
	- pylint
	- codespell
	# - clang-format # not required
	- yaml-lint
	if: (!cancelled())
	steps:
	- name: Check if any job failed
	run: \|
	if [[ -z "$(echo "${{ join(needs.*.result, '') }}" \| sed -e 's/success//g')" ]]; then
	echo "All jobs succeeded"
	else
	echo "One or more jobs did not succeed"
	exit 1
	fi

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DAOS-16686 dfuse: Fix overlapping chunk reads. #11014

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DAOS-16686 dfuse: Fix overlapping chunk reads. #11014

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