docker_cron #412
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| # Run the cron job in docker container | |
| name: docker_cron | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: '0 0 * * *' # daily | |
| jobs: | |
| salvage_pipeline: | |
| name: salvage pipeline | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: install containers | |
| run: | | |
| docker pull dapperstats/accessor | |
| docker pull dapperstats/salvage | |
| - name: start up and name containers | |
| run: | | |
| docker run --name acc --restart=always -i dapperstats/accessor | |
| docker run --name salv --restart=always -id dapperstats/salvage | |
| - name: copy data files and scripts | |
| run: | | |
| docker cp acc:/data . | |
| docker cp data salv:/ | |
| docker cp acc:/scripts . | |
| docker cp scripts salv:/ | |
| docker cp site salv:/ | |
| - name: run R salvage script in the container | |
| run: | | |
| docker exec -i salv R -e "source('scripts/salvage_script.R')" | |
| - name: copy out the site and list contents | |
| run: | | |
| docker cp salv:/site . | |
| ls site | |
| - name: update the github repo with the built site for cron | |
| if: ${{ github.event_name == 'schedule'}} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| bash scripts/update_github.bash | |
| - name: don't update the github repo with the built site for pr | |
| if: ${{ github.event_name == 'pull_request'}} | |
| run: | | |
| echo "Repo not updated for PR only" | |