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Add PlatinumTR and STRipy catalogs
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hdashnow committed Aug 2, 2024
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Expand Up @@ -195,13 +195,18 @@ <h3 class="ui header">Computational methods</h3>

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<div class="six wide right floated column">
<h3 class="ui header">Tandem repeat catalogs</h3>
<h3 class="ui header">Disease repeat catalogs</h3>
<p>
<li><a href="https://github.com/broadinstitute/str-analysis/tree/main/str_analysis/variant_catalogs">gnomAD disease loci: ExpansionHunter format</a></li>
<li><a href="https://strchive.org/database/">STRchive disease loci: TRGT format</a></li>
<li><a href="https://github.com/broadinstitute/str-analysis/tree/main/str_analysis/variant_catalogs">gnomAD disease loci: ExpansionHunter and TRGT formats</a></li>
<li><a href="https://stripy.org/expansionhunter-catalog-creator">STRipy disease loci: ExpansionHunter format</a></li>
</p>
<h3 class="ui header">Genome repeat catalogs</h3>
<p>
<li><a href="https://zenodo.org/records/13178746">PlatinumTRs: 7.8 million reference TRs in TRGT format</a></li>
<li><a href="https://github.com/Illumina/RepeatCatalogs">174,293 polymorphic STRs: ExpansionHunter format</a>
<li><a href="https://github.com/PacificBiosciences/trgt/blob/main/repeats/repeat_catalog.hg38.bed">174,293 polymorphic STRs: TRGT format</a>
</p>

<h3 class="ui header">Databases</h3>
<p>
<li><a href="https://gnomad.broadinstitute.org/short-tandem-repeats">gnomAD: Tandem Repeats</a></li>
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