From 2224b4d21d31d7a9125c5383528ae1faac7792ba Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 5 Mar 2024 00:18:52 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : b64b8924eaa5dc575a5e1a0847bc6184f0b590a9
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-11-20 15:12:55 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 9ee1a59ecd63c67730c7ba91559b5faaa139c612
Branch  : main
Author  : JCSzamosi <4465403+JCSzamosi@users.noreply.github.com>
Time    : 2023-11-20 15:11:10 +0000
Message : Merge pull request #162 from metalichen/fixlinks

Fixed broken links
---
 01-tidiness.html                    | 16 +++++++---------
 02-project-planning.html            |  9 ++++-----
 03-ncbi-sra.html                    |  2 +-
 404.html                            |  4 ++--
 CODE_OF_CONDUCT.html                |  2 +-
 LICENSE.html                        |  2 +-
 aio.html                            | 22 +++++++++++-----------
 data.html                           |  2 +-
 discuss.html                        |  2 +-
 images.html                         |  4 ++--
 index.html                          |  4 ++--
 instructor-notes.html               |  4 ++--
 instructor/01-tidiness.html         | 16 +++++++---------
 instructor/02-project-planning.html |  9 ++++-----
 instructor/03-ncbi-sra.html         |  2 +-
 instructor/404.html                 |  4 ++--
 instructor/CODE_OF_CONDUCT.html     |  2 +-
 instructor/LICENSE.html             |  2 +-
 instructor/aio.html                 | 22 +++++++++++-----------
 instructor/data.html                |  2 +-
 instructor/discuss.html             |  2 +-
 instructor/images.html              |  4 ++--
 instructor/index.html               |  4 ++--
 instructor/instructor-notes.html    |  4 ++--
 instructor/key-points.html          |  4 ++--
 instructor/old-ncbi.html            |  2 +-
 instructor/profiles.html            |  4 ++--
 instructor/reference.html           |  2 +-
 key-points.html                     |  4 ++--
 old-ncbi.html                       |  2 +-
 pkgdown.yml                         |  4 ++--
 profiles.html                       |  4 ++--
 reference.html                      |  2 +-
 33 files changed, 84 insertions(+), 90 deletions(-)

diff --git a/01-tidiness.html b/01-tidiness.html
index 03e862d0..3f4683b7 100644
--- a/01-tidiness.html
+++ b/01-tidiness.html
@@ -337,13 +337,12 @@ <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 unique identifiers, because even if you process the same sample twice,
 you do not usually do it on the same day, or if you do, you’re aware of
 it and give them names like A and B.</p>
-<div id="unique-identifiers" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="unique-identifiers" class="callout-inner">
-<h3 class="callout-title">Unique identifiers<a class="anchor" aria-label="anchor" href="#unique-identifiers"></a>
-</h3>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="unique-identifiers">Unique identifiers<a class="anchor" aria-label="anchor" href="#unique-identifiers"></a></h3>
 <div class="callout-content">
 <p>Unique identifiers are a unique name for a sample or set of
 sequencing data. They are names for that data that only exist for that
@@ -358,13 +357,12 @@ <h3 class="callout-title">Unique identifiers<a class="anchor" aria-label="anchor
 Excel.</p>
 <p>What type of data to collect depends on your experiment and there are
 often guidelines from metadata standards.</p>
-<div id="metadata-standards" class="callout callout">
+<div id="callout2" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="metadata-standards" class="callout-inner">
-<h3 class="callout-title">Metadata standards<a class="anchor" aria-label="anchor" href="#metadata-standards"></a>
-</h3>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="metadata-standards">Metadata standards<a class="anchor" aria-label="anchor" href="#metadata-standards"></a></h3>
 <div class="callout-content">
 <p>Many fields have particular ways that they structure their metadata
 so it’s consistent and can be used across the field.</p>
@@ -537,7 +535,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/organization-genomics/01-tidiness.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-06-14",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/02-project-planning.html b/02-project-planning.html
index e5e93ab3..e0c8d5fe 100644
--- a/02-project-planning.html
+++ b/02-project-planning.html
@@ -461,13 +461,12 @@ <h4 id="some-data-storage-solutions">Some data storage solutions<a class="anchor
 search engine, and asking for help are all valid ways of solving your
 problems. As you complete the lessons you’ll be able to use all of those
 methods more efficiently.</p>
-<div id="where-to-go-from-here" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="where-to-go-from-here" class="callout-inner">
-<h3 class="callout-title">Where to go from here?<a class="anchor" aria-label="anchor" href="#where-to-go-from-here"></a>
-</h3>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="where-to-go-from-here">Where to go from here?<a class="anchor" aria-label="anchor" href="#where-to-go-from-here"></a></h3>
 <div class="callout-content">
 <p>More reading about core competencies</p>
 <p>L. Welch, F. Lewitter, R. Schwartz, C. Brooksbank, P. Radivojac, B.
@@ -551,7 +550,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/organization-genomics/02-project-planning.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/03-ncbi-sra.html b/03-ncbi-sra.html
index c48f00e1..5d117774 100644
--- a/03-ncbi-sra.html
+++ b/03-ncbi-sra.html
@@ -550,7 +550,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/organization-genomics/03-ncbi-sra.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-11-20",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index aaf471f2..3b7a0810 100644
--- a/404.html
+++ b/404.html
@@ -275,8 +275,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/404.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/404.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index f9412e43..448f8beb 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -301,7 +301,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index e480b9a2..2baf2f39 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -352,7 +352,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/LICENSE.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 7772058e..28af8885 100644
--- a/aio.html
+++ b/aio.html
@@ -369,12 +369,12 @@ <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 unique identifiers, because even if you process the same sample twice,
 you do not usually do it on the same day, or if you do, you’re aware of
 it and give them names like A and B.</p>
-<div id="unique-identifiers" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="unique-identifiers" class="callout-inner">
-<h3 class="callout-title">Unique identifiers<a class="anchor" aria-label="anchor" href="#unique-identifiers"></a>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="unique-identifiers">Unique identifiers<a class="anchor" aria-label="anchor" href="#unique-identifiers"></a>
 </h3>
 <div class="callout-content">
 <p>Unique identifiers are a unique name for a sample or set of
@@ -391,12 +391,12 @@ <h3 class="callout-title">Unique identifiers<a class="anchor" aria-label="anchor
 Excel.</p>
 <p>What type of data to collect depends on your experiment and there are
 often guidelines from metadata standards.</p>
-<div id="metadata-standards" class="callout callout">
+<div id="callout2" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="metadata-standards" class="callout-inner">
-<h3 class="callout-title">Metadata standards<a class="anchor" aria-label="anchor" href="#metadata-standards"></a>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="metadata-standards">Metadata standards<a class="anchor" aria-label="anchor" href="#metadata-standards"></a>
 </h3>
 <div class="callout-content">
 <p>Many fields have particular ways that they structure their metadata
@@ -767,12 +767,12 @@ <h4 id="some-data-storage-solutions">Some data storage solutions<a class="anchor
 search engine, and asking for help are all valid ways of solving your
 problems. As you complete the lessons you’ll be able to use all of those
 methods more efficiently.</p>
-<div id="where-to-go-from-here" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="where-to-go-from-here" class="callout-inner">
-<h3 class="callout-title">Where to go from here?<a class="anchor" aria-label="anchor" href="#where-to-go-from-here"></a>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="where-to-go-from-here">Where to go from here?<a class="anchor" aria-label="anchor" href="#where-to-go-from-here"></a>
 </h3>
 <div class="callout-content">
 <p>More reading about core competencies</p>
@@ -1126,8 +1126,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://datacarpentry.github.io/organization-genomics/aio.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/data.html b/data.html
index 73eea46d..8de4cf7d 100644
--- a/data.html
+++ b/data.html
@@ -381,7 +381,7 @@ <h2 id="references">References<a class="anchor" aria-label="anchor" href="#refer
   "identifier": "https://datacarpentry.github.io/organization-genomics/data.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/discuss.html b/discuss.html
index 56eb5baa..6396047b 100644
--- a/discuss.html
+++ b/discuss.html
@@ -294,7 +294,7 @@ <h1>Discussion</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/discuss.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index d3974244..9d7dd04f 100644
--- a/images.html
+++ b/images.html
@@ -345,8 +345,8 @@ <h3 id="03-ncbi-sra-figure-5">Figure 5</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/images.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/images.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index e79619d3..aec1e1dd 100644
--- a/index.html
+++ b/index.html
@@ -348,8 +348,8 @@ <h3 class="callout-title">For Instructors<a class="anchor" aria-label="anchor" h
   "url": "https://datacarpentry.github.io/organization-genomics/index.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/index.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index 147f9d66..c8b67dac 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -468,8 +468,8 @@ <h4 id="people-are-not-interactive-or-responsive-on-the-exercises">People are no
   "url": "https://datacarpentry.github.io/organization-genomics/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor-notes.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/01-tidiness.html b/instructor/01-tidiness.html
index 8dd43523..570aa0c2 100644
--- a/instructor/01-tidiness.html
+++ b/instructor/01-tidiness.html
@@ -339,13 +339,12 @@ <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 unique identifiers, because even if you process the same sample twice,
 you do not usually do it on the same day, or if you do, you’re aware of
 it and give them names like A and B.</p>
-<div id="unique-identifiers" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="unique-identifiers" class="callout-inner">
-<h3 class="callout-title">Unique identifiers<a class="anchor" aria-label="anchor" href="#unique-identifiers"></a>
-</h3>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="unique-identifiers">Unique identifiers<a class="anchor" aria-label="anchor" href="#unique-identifiers"></a></h3>
 <div class="callout-content">
 <p>Unique identifiers are a unique name for a sample or set of
 sequencing data. They are names for that data that only exist for that
@@ -360,13 +359,12 @@ <h3 class="callout-title">Unique identifiers<a class="anchor" aria-label="anchor
 Excel.</p>
 <p>What type of data to collect depends on your experiment and there are
 often guidelines from metadata standards.</p>
-<div id="metadata-standards" class="callout callout">
+<div id="callout2" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="metadata-standards" class="callout-inner">
-<h3 class="callout-title">Metadata standards<a class="anchor" aria-label="anchor" href="#metadata-standards"></a>
-</h3>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="metadata-standards">Metadata standards<a class="anchor" aria-label="anchor" href="#metadata-standards"></a></h3>
 <div class="callout-content">
 <p>Many fields have particular ways that they structure their metadata
 so it’s consistent and can be used across the field.</p>
@@ -539,7 +537,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/01-tidiness.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-06-14",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/02-project-planning.html b/instructor/02-project-planning.html
index 2f67f90a..44c74229 100644
--- a/instructor/02-project-planning.html
+++ b/instructor/02-project-planning.html
@@ -463,13 +463,12 @@ <h4 id="some-data-storage-solutions">Some data storage solutions<a class="anchor
 search engine, and asking for help are all valid ways of solving your
 problems. As you complete the lessons you’ll be able to use all of those
 methods more efficiently.</p>
-<div id="where-to-go-from-here" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="where-to-go-from-here" class="callout-inner">
-<h3 class="callout-title">Where to go from here?<a class="anchor" aria-label="anchor" href="#where-to-go-from-here"></a>
-</h3>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="where-to-go-from-here">Where to go from here?<a class="anchor" aria-label="anchor" href="#where-to-go-from-here"></a></h3>
 <div class="callout-content">
 <p>More reading about core competencies</p>
 <p>L. Welch, F. Lewitter, R. Schwartz, C. Brooksbank, P. Radivojac, B.
@@ -553,7 +552,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/02-project-planning.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/03-ncbi-sra.html b/instructor/03-ncbi-sra.html
index b67de697..48dd3f66 100644
--- a/instructor/03-ncbi-sra.html
+++ b/instructor/03-ncbi-sra.html
@@ -552,7 +552,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/03-ncbi-sra.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-11-20",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index ac0763d5..0713ac38 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -275,8 +275,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/404.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/404.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 2c36470d..e435979d 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -303,7 +303,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 617a599f..b8c2af27 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -354,7 +354,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/LICENSE.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index 27a86f1c..f32f9c25 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -376,12 +376,12 @@ <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 unique identifiers, because even if you process the same sample twice,
 you do not usually do it on the same day, or if you do, you’re aware of
 it and give them names like A and B.</p>
-<div id="unique-identifiers" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="unique-identifiers" class="callout-inner">
-<h3 class="callout-title">Unique identifiers<a class="anchor" aria-label="anchor" href="#unique-identifiers"></a>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="unique-identifiers">Unique identifiers<a class="anchor" aria-label="anchor" href="#unique-identifiers"></a>
 </h3>
 <div class="callout-content">
 <p>Unique identifiers are a unique name for a sample or set of
@@ -398,12 +398,12 @@ <h3 class="callout-title">Unique identifiers<a class="anchor" aria-label="anchor
 Excel.</p>
 <p>What type of data to collect depends on your experiment and there are
 often guidelines from metadata standards.</p>
-<div id="metadata-standards" class="callout callout">
+<div id="callout2" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="metadata-standards" class="callout-inner">
-<h3 class="callout-title">Metadata standards<a class="anchor" aria-label="anchor" href="#metadata-standards"></a>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="metadata-standards">Metadata standards<a class="anchor" aria-label="anchor" href="#metadata-standards"></a>
 </h3>
 <div class="callout-content">
 <p>Many fields have particular ways that they structure their metadata
@@ -775,12 +775,12 @@ <h4 id="some-data-storage-solutions">Some data storage solutions<a class="anchor
 search engine, and asking for help are all valid ways of solving your
 problems. As you complete the lessons you’ll be able to use all of those
 methods more efficiently.</p>
-<div id="where-to-go-from-here" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div id="where-to-go-from-here" class="callout-inner">
-<h3 class="callout-title">Where to go from here?<a class="anchor" aria-label="anchor" href="#where-to-go-from-here"></a>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title" id="where-to-go-from-here">Where to go from here?<a class="anchor" aria-label="anchor" href="#where-to-go-from-here"></a>
 </h3>
 <div class="callout-content">
 <p>More reading about core competencies</p>
@@ -1135,8 +1135,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/aio.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/data.html b/instructor/data.html
index bed79dd9..30413f6c 100644
--- a/instructor/data.html
+++ b/instructor/data.html
@@ -383,7 +383,7 @@ <h2 id="references">References<a class="anchor" aria-label="anchor" href="#refer
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/data.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/discuss.html b/instructor/discuss.html
index b62929ff..4ffcd208 100644
--- a/instructor/discuss.html
+++ b/instructor/discuss.html
@@ -296,7 +296,7 @@ <h1>Discussion</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/discuss.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 1c3dde57..9cf48756 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -351,8 +351,8 @@ <h3 id="03-ncbi-sra-figure-5">Figure 5</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/images.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/images.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 8628501a..de4f0d56 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -391,8 +391,8 @@ <h3 class="callout-title">For Instructors<a class="anchor" aria-label="anchor" h
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/index.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/index.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 37c4faf4..5bbca674 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -477,8 +477,8 @@ <h4 id="people-are-not-interactive-or-responsive-on-the-exercises">People are no
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/instructor-notes.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index ff2d0e3f..4ec5391a 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -336,8 +336,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/key-points.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/old-ncbi.html b/instructor/old-ncbi.html
index 99beb820..07ae4af6 100644
--- a/instructor/old-ncbi.html
+++ b/instructor/old-ncbi.html
@@ -318,7 +318,7 @@ <h1>Old NCBI</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/old-ncbi.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index 74d8350a..288ce715 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -252,8 +252,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/profiles.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index c4df1b4d..2491fb2c 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -394,7 +394,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/reference.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index a336f3bc..f8785085 100644
--- a/key-points.html
+++ b/key-points.html
@@ -330,8 +330,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/organization-genomics/key-points.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/old-ncbi.html b/old-ncbi.html
index 00411e47..88e30fad 100644
--- a/old-ncbi.html
+++ b/old-ncbi.html
@@ -316,7 +316,7 @@ <h1>Old NCBI</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/old-ncbi.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index 10f4d002..3218a77e 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -1,6 +1,6 @@
-pandoc: 2.19.2
+pandoc: 3.1.11
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-02-27T00:20Z
+last_built: 2024-03-05T00:18Z
 
diff --git a/profiles.html b/profiles.html
index 072d4e8e..57e4e0aa 100644
--- a/profiles.html
+++ b/profiles.html
@@ -252,8 +252,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/profiles.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 713169c3..730222df 100644
--- a/reference.html
+++ b/reference.html
@@ -392,7 +392,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/reference.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>