Overhaul setup of Flask and Celery apps #496

	name: Tests

	on:
	push:
	branches:
	- master
	pull_request:
	branches:
	- master

	env:
	RABBITMQ_DEFAULT_USER: tester
	RABBITMQ_DEFAULT_PASS: testpass
	POSTGRES_DB: pgdb
	POSTGRES_USER: tester
	POSTGRES_PASSWORD: testpass
	CELERY_BROKER_URL: "amqp://tester:testpass@localhost:5672"
	CELERY_RESULT_BACKEND: "redis://localhost:6379"
	SQLALCHEMY_DATABASE_URI: "postgresql+psycopg2://tester:testpass@localhost:5432/pgdb"

	jobs:
	test:
	runs-on: ubuntu-latest
	steps:
	- name: Configure environment
	run: \|
	git config --global user.name dl-registry
	git config --global user.email [email protected]
	- name: Install git-annex
	shell: bash
	run: \|
	bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh)
	sudo apt-get update -qq
	sudo apt-get install eatmydata
	sudo eatmydata apt-get install git-annex-standalone
	- uses: actions/checkout@v3
	with:
	fetch-depth: 0
	- name: Set up Python 3.9
	uses: actions/setup-python@v4
	with:
	python-version: '3.9'
	- name: Install dependencies
	run: \|
	pip install --upgrade pip
	pip install wheel
	pip install mypy types-requests
	pip install .[tests]
	- name: Set up broker, result backend, and database services
	run: docker compose -f docker-compose.testing.yml up -d --build
	- name: Run tests with coverage
	run: pytest --cov=. --cov-report=xml
	- name: mypy check
	run: mypy datalad_registry datalad_registry_client
	- name: Upload coverage to codecov
	uses: codecov/codecov-action@v3

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