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Merge dtq-dev updated to lindat (#829)
* UFAL/Removed duplicities of the bitstreams in the cmdi (#766) * Removed duplicities of the bitstreams in the cmdi. * Fixed checkstyle violation * used lindat code instead of vanilla. * Ufal/Preview issues (#764) * Ensure the content preview doesn't overload maximum length of the column in the database. And encode the input stream into UTF-8. * Do not store HTML content in the database because it could be longer than the limit of the database column. * UFAL/Encoded the UTF-8 characters from the redirect URL to UTF (#758) * Encoded the UTF-8 characters from the redirect URL to UTF * Moved ClarinUtils into Utils class * Added a new `dq` package into ComponentScan * Moved dq.Utils into DSpace utils.Utils because the components with the same name causes conflicts. * Removed *.dq component scan from the App * Merge pull request DSpace#9790 from DSpace/backport-9775-to-dspace-7_x (#769) [Port dspace-7_x] Make statistics autocommit much more frequently Co-authored-by: Tim Donohue <[email protected]> * test for bitstream with null value of sizebytes * Update README.md * UFAL/Shibboleth - load more net-id headers e.g. persistent-id (#772) * Load netid from more than one header. authentication-shibboleth.netid-header could be list, not only single value * Shibboleth login - sort the emails passed in the shibboleth email header and get the first one. * The user is redirected to the login page when it is trying to update eperson email which is already assigned to another eperson. * Sorting emails is moved into specific method and ShibbolethLoginFilter is updated following the ShibAuthentication changes * Fixed failing tests * The ClarinShibbolethLoginFilter and ClarinShibAuthentication has duplicate code, I put it into static method. * Propagate the verification token to the DB after the email is successfully sent. (#786) * UFAL/Enhanced type-bind feature (#762) * type bind is correctly rendered in the FE, but BE is still not working * Synchronized the `submission-forms_cs.xml` * Added doc into `submission-forms` about enhanced type-bind `field` * Updated `local.cfg` for tests - added type-bind property * Updated docs for the customized type-bind configuration property. * Updated MetadataValidation following the type-bind customization. * Added isAllowed function for multiple type-bind definitions * Added some docs for the new method * The values of the input wasn't loaded. * Allowed fields could be empty when they should have values. * Used isEmpty function and created constant for the `=>`. * create preview content for tar files (#759) * create preview content for tar files * Added right logs * devided extractFile funs into several separated smaller funs * added comment and removed empty line * added empty lines and removed unwanted comments * removed empty line * used consts * try incorrect identification level * log errors and removed unneeded consts --------- Co-authored-by: milanmajchrak <[email protected]> * Internal/fix failing Clarin integration test (#796) * Initial commit * Ignore the test class from where the tests has started failing. * Ignored half of tests in the ClarinShibbolethLoginFilterIT file * Ignored all tests * unignore some tests * 3 tests ignored 3 allowed * Maybe the problematic test is hidden between 3 unignored tests * two candidates * The last candidate * Ignore just wrong test and all test should pass * Clean up object created in the test. * Removed unused import. * Check the user which is going to be deleted is not null. * Rest api for handle resolution with metadata * decoded rawvalues and response json modification * used static extractMetadata funct in HandlePlugin * return dict: * removed property for test from local * Add default licenses - from ZCU update (#801) * Added flyway file to insert default licenses with license labels and mappings * Added required header * UFAL/share submission by email (#780) * Updated table workspace with share token, created endpoint to generate share token and it is sent via email * Added method to get workspaceitem via share token. * Added an endpoint for changing the submission's owner. * Added license headers * Added test for fetching item with share Token * Added tests to check the owner is changed * Added better explanation why the BE must return Page object in the search endpoint * Validate the user in the SubmissionController, it cannot be null * Updated email - some values are fetched directly from the configuration property * Updated preAuthorization method to ADD instead of WRITE (write is used for controlling authorization for modifying the Item) and updated shareURL * Authorize the submitter which is trying to take sharing item via shareToken. * Update integration test following the feature update * Import default licenses only if the license tables are empty. (#808) * Oai elg crosswalk (#798) * problem with language code * fix amount and sizeUnitOther rest-tests errors * added language coding * new language and funding project mishmash array position * added isoCodes * removed handle from item submission (#812) * UFAL/Shibboleth - netid-header should use getArrayProperty everywhere (#807) * Fetch netid as array from the cfg. Now netid as array is used everywhere. Added integration test to ask for an email when the user send only persistent-id in the shib header. * Fixed checkstyle issue * The user is not signed in without using link with the verification token from the email/ (#809) * UFAL/Shibboleth - show error in the UI when shibboleth authentication is failed (#810) * The user is not signed in without using link with the verification token from the email/ * Send a redirect to UI with specific parameter that the Shibboleth authorization wasn't successful * UFAL/Autocomplete enhancement (#768) * Added solr index `handle_title_ac` and `_comp` for the Item * Added support for searching results from specific solr indexes. 1. Updated submission-forms autocomplete definition to specify a specific index. 2. Updated configuration is provided via REST API. 3. Create a new `/suggestions` endpoint for searching values from custom solr index - it returns VocabularyEntry page. * Supported searching Item byHandle when passed a handle as parameter without handle canonical prefix. * Added autocompleteCustom `solr-subject_ac` and `handle_title_ac`. * Added autocompleteCustom `solr-publisher_ac`. * Added cfg property to define a separator from the solr value to get only display value. * Added autocompleteCustom `solr-dataProvider_ac` * Refactored code and created integration test for the SuggestionRestController * Updated suggestion integration tests because it has had a conflict with another IT * Added doc and changed `autocomplete.custom.format` to `autocomplete.custom.separator` for proper naming. * Added support for loading suggestions from the json file - need to refactor. * Refactored and added docs. * Created tests and fixed failing ones due to updated solr definition * Synchronized submission-forms_cs.xml with the original-english one * Added docs about magic constants * Added doc why the handle is updated to canonical form in the searchbyHandle endpoint * Allow searching only within the solr indexes or JSON files permitted by the configuration. * Removed normalization of handle prefix because there could be more prefixes. Expect only handle value. * Fixed if condition and config property default value. * Fixed integration tests. Allowed autocomplete custom was missing in the test cfg. * The suggestion endpoint is allowed only for authorized users * Refactored method for the normalizing the query for the discoverQuery and added unit tests. * UFAL/Changed position of rows in submission-forms.xml following v5 (#802) * Changed position of rows in submission-forms.xml following v5 * Fixed the alignment of some text * Removed rows which are not in the v5 * Removed license selector from the `teaching` and `clariah-data` collections * Updated input differences in the submission-forms.xml following the v5. --------- Co-authored-by: Juraj Roka <[email protected]> Co-authored-by: milanmajchrak <[email protected]> * Show db connection statistics in the log file or the `dbstatistics` endpoint (#815) * Show db statistics in the log file or the `dbstatistics` endpoint * Finding out why github checks are failed - undo hibernate.cfg * Disabled automatic logging * Use scheduled CRON job instead of PostConstruct * hibernate generating property true --------- Co-authored-by: Paurikova2 <[email protected]> * Translation of submission-forms to _cs (#816) * Translation of submission-forms to _cs * Translated bitstream metadata and complex input fields * Translated the rest of submission-froms_cs.xml * Fixed regex... it must contain regex value, not the message. --------- Co-authored-by: Juraj Roka <[email protected]> Co-authored-by: milanmajchrak <[email protected]> * Updated cfg to pretify the author suggestions (#819) * crosswalk-embargo (#821) * added fn for embargo * using of res policy end_date and added comments * fix string format problem with %s * integration tests are falling down * checkstyle violations * removed findHandle duplicity * added deleted line * checkstyle violations * For now the complex input field is without autocomplete for the size and contact person (#823) * Send the custom type bind `field` to the FE configuration (#822) * fix date converting to string (#825) * fix date converting to string * made const from format * checkstyle * cherry-pick clarin v7 into dtq dev (#820) * cherry-picked DataCite related changes from customer/uk * Add a script that adds a file from url to an item intended for large file workflows * Add ways to influence the bitstream name * add more options to specify an item * Expose resourceId (DSpace#1134) A BE part of DSpace#1127 - this exposes the resourceId so it can be used in the handle mgmt table * fixes ufal#1135 - findEpersonByNetId should stop searching when it finds an eperson - moved the `return eperson` inside the for cycle (after eperson non null check). - removed the eperson param (both callers were passing in `null`) * Test release without db logs (#827) * UFAL/Matomo statistics with dimension (#813) * Updated the version of matomo dependency and tried to change request from Custom Variables to Dimension * Added a custom dimension with item's handle URL * Send custom dimension also in oai tracker * Use only IPv4 address, the Matomo tracker has a problem with IPv6 * Do not change custom dimension when the Item is null * First custom dimension should have ID '1'. * Use a valid URL for Matomo tracker in the IT * Configure handle custom dimension ID in the clarin-dspace.cfg * Refactored ipv4 method to be more readable - return null --------- Co-authored-by: Juraj Roka <[email protected]> Co-authored-by: milanmajchrak <[email protected]> Co-authored-by: milanmajchrak <[email protected]> * The `dspace.name.short` is not working properly in the email, use `dspace.shortname` instead (#828) --------- Co-authored-by: Tim Donohue <[email protected]> Co-authored-by: Paurikova2 <[email protected]> Co-authored-by: Jozef Misutka <[email protected]> Co-authored-by: jurinecko <[email protected]> Co-authored-by: Juraj Roka <[email protected]> Co-authored-by: Paurikova2 <[email protected]> Co-authored-by: Ondřej Košarko <[email protected]>
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