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feat: Simplification of Document Search Evaluation interface #258

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@kdziedzic68 kdziedzic68 linked an issue Dec 18, 2024 that may be closed by this pull request
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Code Coverage Summary

Filename                                                                                                      Stmts    Miss  Cover    Missing
----------------------------------------------------------------------------------------------------------  -------  ------  -------  ---------------------------------
packages/__init__.py                                                                                              0       0  100.00%
packages/ragbits-cli/src/ragbits/cli/__init__.py                                                                 26       4  84.62%   66-67, 74-75
packages/ragbits-cli/src/ragbits/cli/state.py                                                                    42       9  78.57%   37, 39-40, 43, 57, 61-64
packages/ragbits-core/src/ragbits/core/__init__.py                                                                0       0  100.00%
packages/ragbits-core/src/ragbits/core/cli.py                                                                     6       0  100.00%
packages/ragbits-core/src/ragbits/core/config.py                                                                 17       0  100.00%
packages/ragbits-core/src/ragbits/core/audit/__init__.py                                                         67       6  91.04%   40-48
packages/ragbits-core/src/ragbits/core/audit/base.py                                                             32       0  100.00%
packages/ragbits-core/src/ragbits/core/audit/otel.py                                                             36      16  55.56%   20-21, 35-41, 51-54, 64-67, 96
packages/ragbits-core/src/ragbits/core/embeddings/__init__.py                                                     4       0  100.00%
packages/ragbits-core/src/ragbits/core/embeddings/base.py                                                        17       2  88.24%   51, 63
packages/ragbits-core/src/ragbits/core/embeddings/exceptions.py                                                  17       7  58.82%   7-8, 17, 26-27, 36, 45
packages/ragbits-core/src/ragbits/core/embeddings/litellm.py                                                     30      17  43.33%   62-94
packages/ragbits-core/src/ragbits/core/embeddings/noop.py                                                         6       0  100.00%
packages/ragbits-core/src/ragbits/core/llms/__init__.py                                                           3       0  100.00%
packages/ragbits-core/src/ragbits/core/llms/base.py                                                              57       9  84.21%   52, 71, 155-163, 166-168
packages/ragbits-core/src/ragbits/core/llms/factory.py                                                           12       3  75.00%   30, 41, 51
packages/ragbits-core/src/ragbits/core/llms/litellm.py                                                           34      10  70.59%   75, 81-102
packages/ragbits-core/src/ragbits/core/llms/types.py                                                              9       2  77.78%   25, 29
packages/ragbits-core/src/ragbits/core/llms/clients/__init__.py                                                   4       0  100.00%
packages/ragbits-core/src/ragbits/core/llms/clients/base.py                                                      26       0  100.00%
packages/ragbits-core/src/ragbits/core/llms/clients/exceptions.py                                                17       7  58.82%   7-8, 17, 26-27, 36, 45
packages/ragbits-core/src/ragbits/core/llms/clients/litellm.py                                                   71      18  74.65%   107, 142-163, 183-188, 199
packages/ragbits-core/src/ragbits/core/llms/clients/local.py                                                     52      24  53.85%   10-13, 65-73, 94-105, 126-142
packages/ragbits-core/src/ragbits/core/metadata_stores/__init__.py                                                3       0  100.00%
packages/ragbits-core/src/ragbits/core/metadata_stores/base.py                                                   11       0  100.00%
packages/ragbits-core/src/ragbits/core/metadata_stores/exceptions.py                                              4       0  100.00%
packages/ragbits-core/src/ragbits/core/metadata_stores/in_memory.py                                              16       0  100.00%
packages/ragbits-core/src/ragbits/core/prompt/__init__.py                                                         2       0  100.00%
packages/ragbits-core/src/ragbits/core/prompt/_cli.py                                                            44      21  52.27%   25-33, 47-49, 63-65, 73-75, 89-97
packages/ragbits-core/src/ragbits/core/prompt/base.py                                                            20       0  100.00%
packages/ragbits-core/src/ragbits/core/prompt/parsers.py                                                         35       0  100.00%
packages/ragbits-core/src/ragbits/core/prompt/prompt.py                                                         126       0  100.00%
packages/ragbits-core/src/ragbits/core/prompt/discovery/__init__.py                                               2       0  100.00%
packages/ragbits-core/src/ragbits/core/prompt/discovery/prompt_discovery.py                                      33       2  93.94%   54-55
packages/ragbits-core/src/ragbits/core/utils/__init__.py                                                          0       0  100.00%
packages/ragbits-core/src/ragbits/core/utils/_pyproject.py                                                       38       1  97.37%   113
packages/ragbits-core/src/ragbits/core/utils/config_handling.py                                                  61       8  86.89%   15, 47-48, 55-56, 144-146
packages/ragbits-core/src/ragbits/core/utils/decorators.py                                                       29       0  100.00%
packages/ragbits-core/src/ragbits/core/utils/dict_transformations.py                                             72       3  95.83%   24, 27, 108
packages/ragbits-core/src/ragbits/core/vector_stores/__init__.py                                                  5       0  100.00%
packages/ragbits-core/src/ragbits/core/vector_stores/_cli.py                                                     59       7  88.14%   51, 71, 77, 96, 104-106
packages/ragbits-core/src/ragbits/core/vector_stores/base.py                                                     38       0  100.00%
packages/ragbits-core/src/ragbits/core/vector_stores/chroma.py                                                   58       1  98.28%   75
packages/ragbits-core/src/ragbits/core/vector_stores/in_memory.py                                                37       0  100.00%
packages/ragbits-core/src/ragbits/core/vector_stores/qdrant.py                                                   61       1  98.36%   75
packages/ragbits-core/tests/cli/__init__.py                                                                       0       0  100.00%
packages/ragbits-core/tests/cli/test_vector_store.py                                                             76       0  100.00%
packages/ragbits-core/tests/integration/vector_stores/test_vector_store.py                                       31       0  100.00%
packages/ragbits-core/tests/unit/__init__.py                                                                      0       0  100.00%
packages/ragbits-core/tests/unit/audit/__init__.py                                                                0       0  100.00%
packages/ragbits-core/tests/unit/audit/test_otel.py                                                               7       0  100.00%
packages/ragbits-core/tests/unit/audit/test_trace.py                                                             88       3  96.59%   13, 16, 19
packages/ragbits-core/tests/unit/embeddings/test_from_config.py                                                  13       0  100.00%
packages/ragbits-core/tests/unit/llms/__init__.py                                                                 0       0  100.00%
packages/ragbits-core/tests/unit/llms/test_from_config.py                                                        17       0  100.00%
packages/ragbits-core/tests/unit/llms/test_litellm.py                                                            64       0  100.00%
packages/ragbits-core/tests/unit/llms/factory/__init__.py                                                         0       0  100.00%
packages/ragbits-core/tests/unit/llms/factory/test_get_default_llm.py                                            12       0  100.00%
packages/ragbits-core/tests/unit/metadata_stores/__init__.py                                                      0       0  100.00%
packages/ragbits-core/tests/unit/metadata_stores/test_from_config.py                                             11       0  100.00%
packages/ragbits-core/tests/unit/metadata_stores/test_in_memory.py                                               22       0  100.00%
packages/ragbits-core/tests/unit/prompts/__init__.py                                                              0       0  100.00%
packages/ragbits-core/tests/unit/prompts/test_parsers.py                                                         65       0  100.00%
packages/ragbits-core/tests/unit/prompts/test_prompt.py                                                         165       0  100.00%
packages/ragbits-core/tests/unit/prompts/discovery/__init__.py                                                    0       0  100.00%
packages/ragbits-core/tests/unit/prompts/discovery/prompt_classes_for_tests.py                                   30       0  100.00%
packages/ragbits-core/tests/unit/prompts/discovery/test_prompt_discovery.py                                      18       0  100.00%
packages/ragbits-core/tests/unit/prompts/discovery/ragbits_tests_pkg_with_prompts/__init__.py                     2       1  50.00%   3
packages/ragbits-core/tests/unit/prompts/discovery/ragbits_tests_pkg_with_prompts/prompts/__init__.py             3       2  33.33%   2-4
packages/ragbits-core/tests/unit/prompts/discovery/ragbits_tests_pkg_with_prompts/prompts/temp_prompt1.py        14       0  100.00%
packages/ragbits-core/tests/unit/prompts/discovery/ragbits_tests_pkg_with_prompts/prompts/temp_prompt2.py        14       0  100.00%
packages/ragbits-core/tests/unit/utils/__init__.py                                                                0       0  100.00%
packages/ragbits-core/tests/unit/utils/test_config_handling.py                                                   65       2  96.92%   27-28
packages/ragbits-core/tests/unit/utils/test_decorators.py                                                        26       2  92.31%   17, 39
packages/ragbits-core/tests/unit/utils/test_dict_transformations.py                                              69       0  100.00%
packages/ragbits-core/tests/unit/utils/pyproject/test_find.py                                                    13       0  100.00%
packages/ragbits-core/tests/unit/utils/pyproject/test_get_config.py                                               9       0  100.00%
packages/ragbits-core/tests/unit/utils/pyproject/test_get_instace.py                                             37       0  100.00%
packages/ragbits-core/tests/unit/vector_stores/__init__.py                                                        0       0  100.00%
packages/ragbits-core/tests/unit/vector_stores/test_chroma.py                                                    61       0  100.00%
packages/ragbits-core/tests/unit/vector_stores/test_from_config.py                                               38       0  100.00%
packages/ragbits-core/tests/unit/vector_stores/test_in_memory.py                                                 84       0  100.00%
packages/ragbits-core/tests/unit/vector_stores/test_qdrant.py                                                    40       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/__init__.py                                          2       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/_main.py                                            92       4  95.65%   206-213, 216
packages/ragbits-document-search/src/ragbits/document_search/documents/__init__.py                                0       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/documents/document.py                               61       2  96.72%   99, 146
packages/ragbits-document-search/src/ragbits/document_search/documents/element.py                                78      12  84.62%   87, 167-174, 183-185
packages/ragbits-document-search/src/ragbits/document_search/documents/exceptions.py                             11       5  54.55%   7-8, 17, 26-27
packages/ragbits-document-search/src/ragbits/document_search/documents/sources.py                               116      13  88.79%   130, 213-218, 255-258, 262-263
packages/ragbits-document-search/src/ragbits/document_search/ingestion/__init__.py                                0       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/ingestion/document_processor.py                     33       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/ingestion/processor_strategies/__init__.py           5       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/ingestion/processor_strategies/base.py              25       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/ingestion/processor_strategies/batched.py           18       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/ingestion/processor_strategies/distributed.py       30       8  73.33%   8-9, 36, 64-71
packages/ragbits-document-search/src/ragbits/document_search/ingestion/processor_strategies/sequential.py        13       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/__init__.py                      3       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/base.py                         19       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/dummy.py                        20       7  65.00%   33, 54-60
packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured/__init__.py         4       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured/default.py         46       4  91.30%   98, 103-104, 137
packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured/images.py          50      19  62.00%   73-80, 87-99, 111, 124
packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured/pdf.py             19       6  68.42%   23, 35-43
packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured/utils.py           38      11  71.05%   71, 82-83, 98-101, 110, 121-123
packages/ragbits-document-search/src/ragbits/document_search/retrieval/__init__.py                                0       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/retrieval/rephrasers/__init__.py                     5       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/retrieval/rephrasers/base.py                         9       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/retrieval/rephrasers/llm.py                         25       4  84.00%   47-50
packages/ragbits-document-search/src/ragbits/document_search/retrieval/rephrasers/noop.py                         6       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/retrieval/rephrasers/prompts.py                     16       1  93.75%   52
packages/ragbits-document-search/src/ragbits/document_search/retrieval/rerankers/__init__.py                      3       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/retrieval/rerankers/base.py                         23       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/retrieval/rerankers/litellm.py                      15       0  100.00%
packages/ragbits-document-search/src/ragbits/document_search/retrieval/rerankers/noop.py                          8       0  100.00%
packages/ragbits-document-search/tests/__init__.py                                                                0       0  100.00%
packages/ragbits-document-search/tests/helpers.py                                                                 3       0  100.00%
packages/ragbits-document-search/tests/integration/__init__.py                                                    0       0  100.00%
packages/ragbits-document-search/tests/integration/test_rerankers.py                                             15       6  60.00%   18-38
packages/ragbits-document-search/tests/integration/test_sources.py                                               23      10  56.52%   22-32, 40-45
packages/ragbits-document-search/tests/integration/test_unstructured.py                                          48      10  79.17%   52-58, 71-77
packages/ragbits-document-search/tests/unit/test_document_processor.py                                           17       0  100.00%
packages/ragbits-document-search/tests/unit/test_document_search.py                                              88       0  100.00%
packages/ragbits-document-search/tests/unit/test_documents.py                                                    13       0  100.00%
packages/ragbits-document-search/tests/unit/test_elements.py                                                     19       0  100.00%
packages/ragbits-document-search/tests/unit/test_local_file_source.py                                            13       0  100.00%
packages/ragbits-document-search/tests/unit/test_processing_strategies.py                                        25       0  100.00%
packages/ragbits-document-search/tests/unit/test_providers.py                                                    41       0  100.00%
packages/ragbits-document-search/tests/unit/test_rephrasers.py                                                   26       0  100.00%
packages/ragbits-document-search/tests/unit/test_rerankers.py                                                    50       1  98.00%   21
packages/ragbits-document-search/tests/unit/test_source_discriminator.py                                         35       0  100.00%
packages/ragbits-document-search/tests/unit/test_sources.py                                                      25       0  100.00%
packages/ragbits-guardrails/src/ragbits/guardrails/__init__.py                                                    0       0  100.00%
packages/ragbits-guardrails/src/ragbits/guardrails/base.py                                                       15       0  100.00%
packages/ragbits-guardrails/src/ragbits/guardrails/openai_moderation.py                                          19       5  73.68%   29-33
packages/ragbits-guardrails/tests/unit/test_openai_moderation.py                                                 35       0  100.00%
TOTAL                                                                                                          3736     316  91.54%

Diff against main

Filename                                                            Stmts    Miss  Cover
----------------------------------------------------------------  -------  ------  --------
packages/ragbits-core/src/ragbits/core/vector_stores/__init__.py       +2       0  +100.00%
TOTAL                                                                  +2       0  +100.00%

Results for commit: 5cd3f31

Minimum allowed coverage is 60%

♻️ This comment has been updated with latest results

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Trivy scanning results.

.venv/lib/python3.10/site-packages/PyJWT-2.9.0.dist-info/METADATA (secrets)

Total: 1 (MEDIUM: 1, HIGH: 0, CRITICAL: 0)

MEDIUM: JWT (jwt-token)
════════════════════════════════════════
JWT token
────────────────────────────────────────
.venv/lib/python3.10/site-packages/PyJWT-2.9.0.dist-info/METADATA:80
────────────────────────────────────────
78 >>> encoded = jwt.encode({"some": "payload"}, "secret", algorithm="HS256")
79 >>> print(encoded)
80 [ *********************************************************************************************************
81 >>> jwt.decode(encoded, "secret", algorithms=["HS256"])
────────────────────────────────────────

.venv/lib/python3.10/site-packages/litellm/llms/huggingface/huggingface_llms_metadata/hf_text_generation_models.txt (secrets)

Total: 1 (MEDIUM: 0, HIGH: 0, CRITICAL: 1)

CRITICAL: HuggingFace (hugging-face-access-token)
════════════════════════════════════════
Hugging Face Access Token
────────────────────────────────────────
.venv/lib/python3.10/site-packages/litellm/llms/huggingface/huggingface_llms_metadata/hf_text_generation_models.txt:36162
────────────────────────────────────────
36160 mncai/Llama2-7B-Active_3rd-floor-LoRA-dim64_epoch4
36161 ajcdp/CM
36162 [ Nagharjun17/*************************************
36163 BigSalmon/InformalToFormalLincoln114Paraphrase
────────────────────────────────────────

.venv/lib/python3.10/site-packages/litellm/proxy/_types.py (secrets)

Total: 1 (MEDIUM: 1, HIGH: 0, CRITICAL: 0)

MEDIUM: Slack (slack-web-hook)
════════════════════════════════════════
Slack Webhook
────────────────────────────────────────
.venv/lib/python3.10/site-packages/litellm/proxy/_types.py:1314
────────────────────────────────────────
1312 alert_to_webhook_url: Optional[Dict] = Field(
1313 None,
1314 [ bhook_url: {'budget_alerts': '*****************************************************************************'}`",
1315 )
────────────────────────────────────────

mhordynski
mhordynski previously approved these changes Dec 23, 2024
@@ -64,11 +65,11 @@ class DocumentSearchWithIngestionPipeline(DocumentSearchPipeline):

def __init__(self, config: DictConfig | None = None) -> None:
super().__init__(config)
self.config.vector_store.config.index_name = str(uuid.uuid4())
# self.config.vector_store.config.index_name = str(uuid.uuid4())
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why is it commented?

args:
callback_type: neptune.integrations.optuna:NeptuneCallback
project: deepsense-ai/ragbits
#callbacks:
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why is it commented?

module = sys.modules[__name__]


def pipeline_factory(pipeline_config: DictConfig) -> EvaluationPipeline:
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maybe we can leverage new WithConstructionConfig class here, same applies for merics and dataloaders factories

"""
Function running evaluation for all datasets and evaluation tasks defined in config.
"""
config = OmegaConf.create(
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do we have to wrap these configs with hydra?

@mhordynski mhordynski dismissed their stale review December 23, 2024 11:52

please apply Michal comments

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feat: Simplification of Document Search Evaluation interface
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