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Some refactoring to remove duplicates, and getting package ready for …
…BEAUTI.
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| Original file line number | Diff line number | Diff line change |
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| <!-- Build BDMM. It is also used by Hudson BDMM project. JUnit test is available for this build. --> | ||
| <project basedir="." default="build_jar_all_BDMM" name="BUILD_BDMM"> | ||
| <description> | ||
| Build BDMM. | ||
| Also used by Hudson BDMM project. | ||
| JUnit test is available for this build. | ||
| $Id: build_BDMM.xml $ | ||
| </description> | ||
|
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| <!-- set global properties for this build --> | ||
| <property name="srcBDMM" location="src" /> | ||
| <property name="buildBDMM" location="build" /> | ||
| <property name="libBDMM" location="lib" /> | ||
| <property name="release_dir" value="release" /> | ||
| <property name="distBDMM" location="${buildBDMM}/dist" /> | ||
| <property name="beast2path" location="../beast2" /> | ||
| <property name="libBeast2" location="${beast2path}/lib" /> | ||
| <property name="srcBeast2" location="${beast2path}/src" /> | ||
| <property name="beast2classpath" location="${beast2path}/build" /> | ||
| <property name="masterclasspath" location="../MASTER/build" /> | ||
| <property name="mttclasspath" location="../MultiTypeTree/build" /> | ||
| <property name="sampledancestorclasspath" location="..out/production/sampled-ancestors" /> | ||
| <property name="Add_on_dir" value="${release_dir}/add-on" /> | ||
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| <import file="${beast2path}/build.xml" /> | ||
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| <property name="main_class_BEAST" value="beast.app.BeastMCMC" /> | ||
| <property name="report" value="${buildBDMM}/junitreport"/> | ||
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| <path id="classpath"> | ||
| <pathelement path="${buildBDMM}"/> | ||
| <fileset dir="${libBeast2}" includes="junit-4.8.2.jar"/> | ||
| <fileset dir="${libBeast2}" includes="fest.jar"/> | ||
| <fileset dir="${libBeast2}" includes="jam.jar"/> | ||
| <fileset dir="${libBeast2}" includes="commons-math3-3.1.1.jar"/> | ||
| <fileset dir="${libBeast2}" includes="antlr-runtime-4.5.jar"/> | ||
| <fileset dir="../MultiTypeTree/build-lib" includes="guava-15.0.jar"/> | ||
| <pathelement path="${beast2classpath}"/> | ||
| <pathelement path="${masterclasspath}"/> | ||
| <pathelement path="${mttclasspath}"/> | ||
| <pathelement path="${sampledancestorclasspath}"/> | ||
| </path> | ||
|
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||
| <!-- start --> | ||
| <target name="initBDMM"> | ||
| <echo message="${ant.project.name}: ${ant.file}" /> | ||
| </target> | ||
|
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| <target name="cleanBDMM"> | ||
| <delete dir="${buildBDMM}" /> | ||
| </target> | ||
|
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| <!-- clean previous build, and then compile Java source code, and Juint test --> | ||
| <target name="build_all_BDMM" depends="cleanBDMM,compile-allBDMM,junitBDMM" | ||
| description="Clean and Build all run-time stuff"> | ||
| </target> | ||
|
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| <!-- clean previous build, compile Java source code, and Junit test, and make the beast.jar and beauti.jar --> | ||
| <target name="build_jar_all_BDMM" depends="cleanBDMM,compile-allBDMM,junitBDMM,dist_all_BDMM" | ||
| description="Clean and Build all run-time stuff"> | ||
| </target> | ||
|
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| <!-- No JUnit Test, clean previous build, compile Java source code, and make the BDMM.jar and beauti.jar --> | ||
| <target name="build_jar_all_BDMM_NoJUnitTest" depends="cleanBDMM,compile-allBDMM,dist_all_BDMM" | ||
| description="Clean and Build all run-time stuff"> | ||
| </target> | ||
|
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| <!-- compile Java source code --> | ||
| <target name="compile-allBDMM" depends="initBDMM,compile-all"> | ||
|
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|
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| <!-- Capture the path as a delimited property using the refid attribute --> | ||
| <property name="myclasspath" refid="classpath"/> | ||
| <!-- Emit the property to the ant console --> | ||
| <echo message="Classpath = ${myclasspath}"/> | ||
|
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| <mkdir dir="${buildBDMM}" /> | ||
|
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| <!-- Compile the java code from ${srcBDMM} into ${buildBDMM} /bin --> | ||
| <javac srcdir="${srcBDMM}" destdir="${buildBDMM}" classpathref="classpath" | ||
| fork="true" | ||
| memoryinitialsize="256m" | ||
| memorymaximumsize="256m" | ||
| includeAntRuntime='false' | ||
| source="1.8" | ||
| target="1.8"> | ||
| <include name="beast/**/**" /> | ||
| <!-- compile JUnit test classes --> | ||
| <include name="test/beast/**" /> | ||
| </javac> | ||
| <echo message="Successfully compiled." /> | ||
| </target> | ||
|
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| <!-- make the beast.jar and beauti.jar --> | ||
| <target name="dist_all_BDMM" depends="compile-allBDMM" description="create BDMM jar"> | ||
| <!-- Create the distribution directory --> | ||
| <mkdir dir="${distBDMM}" /> | ||
|
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| <!-- Put everything in ${buildBDMM} into the beast.jar file --> | ||
| <jar jarfile="${distBDMM}/BDMM.jar"> | ||
| <manifest> | ||
| <attribute name="Built-By" value="${user.name}" /> | ||
| <attribute name="Main-Class" value="${main_class_BEAST}" /> | ||
| </manifest> | ||
| <fileset dir="${buildBDMM}"> | ||
| <include name="beast/**/*.class" /> | ||
| </fileset> | ||
| <fileset dir="${beast2classpath}"> | ||
| <include name="beast/**/*.class" /> | ||
| <include name="beast/**/*.properties" /> | ||
| <include name="beast/**/*.png" /> | ||
| <include name="beagle/**/*.class" /> | ||
| <include name="org/**/*.class" /> | ||
| </fileset> | ||
| </jar> | ||
| <jar jarfile="${distBDMM}/BDMM.src.jar"> | ||
| <fileset dir="${srcBDMM}"> | ||
| <include name="beast/**/*.java" /> | ||
| <include name="beast/**/*.png" /> | ||
| <include name="beast/**/*.xsl" /> | ||
| </fileset> | ||
| </jar> | ||
| <jar jarfile="${distBDMM}/BDMM.addon.jar"> | ||
| <manifest> | ||
| <attribute name="Built-By" value="${user.name}" /> | ||
| </manifest> | ||
| <fileset dir="${buildBDMM}"> | ||
| <include name="beast/**/*.class" /> | ||
| <include name="util/**/*.class" /> | ||
| <include name="**/*.properties" /> | ||
| </fileset> | ||
| </jar> | ||
| </target> | ||
|
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| <!-- run beast.jar --> | ||
| <target name="run_BDMM"> | ||
| <java jar="${distBDMM}/BDMM.jar" fork="true" /> | ||
| </target> | ||
|
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| <!-- JUnit test --> | ||
| <target name="junitBDMM"> | ||
| <mkdir dir="${report}" /> | ||
| <junit printsummary="yes"> <!--showoutput='yes'--> | ||
| <classpath> | ||
| <path refid="classpath" /> | ||
| <path location="${buildBDMM}" /> | ||
| </classpath> | ||
|
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| <formatter type="xml" /> | ||
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| <batchtest fork="yes" todir="${report}"> | ||
| <fileset dir="${srcBDMM}"> | ||
| <include name="test/**/*Test.java"/> | ||
| </fileset> | ||
| <fileset dir="${srcBeast2}"> | ||
| <include name="test/beast/integration/**/*Test.java"/> | ||
| <exclude name="test/beast/integration/**/ResumeTest.java"/> | ||
| </fileset> | ||
| </batchtest> | ||
| </junit> | ||
| <echo message="JUnit test finished." /> | ||
| </target> | ||
|
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| <target name="junitreport"> | ||
| <junitreport todir="${report}"> | ||
| <fileset dir="${report}" includes="*.xml"/> | ||
| <report format="frames" todir="${report}"/> | ||
| </junitreport> | ||
| <echo message="JUnit test report finished." /> | ||
| </target> | ||
|
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| <target name="addon" | ||
| depends="build_jar_all_BDMM_NoJUnitTest" | ||
| description="release BEAST 2 add-on version of BDMM"> | ||
|
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| <delete dir="${Add_on_dir}" /> | ||
| <!-- Create the release directory --> | ||
| <mkdir dir="${Add_on_dir}" /> | ||
| <mkdir dir="${Add_on_dir}/lib" /> | ||
| <mkdir dir="${Add_on_dir}/examples" /> | ||
| <mkdir dir="${Add_on_dir}/templates" /> | ||
|
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| <copy todir="${Add_on_dir}"> | ||
| <fileset file="version.xml"/> | ||
| </copy> | ||
| <copy todir="${Add_on_dir}/examples"> | ||
| <fileset dir="examples" /> | ||
| </copy> | ||
| <copy todir="${Add_on_dir}/lib"> | ||
| <fileset dir="${distBDMM}" includes="BDMM.addon.jar" /> | ||
| </copy> | ||
| <copy todir="${Add_on_dir}"> | ||
| <fileset dir="${distBDMM}" includes="BDMM.src.jar" /> | ||
| </copy> | ||
| <!--copy todir="${Add_on_dir}/templates"> | ||
| <fileset file="templates/BDSKY_contemp.xml" /> | ||
| <fileset file="templates/BDSKY_serial.xml" /> | ||
| </copy--> | ||
|
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| <jar jarfile="${distBDMM}/BDMM.addon.zip"> | ||
| <fileset dir="${Add_on_dir}"> | ||
| <include name="**/*" /> | ||
| </fileset> | ||
| </jar> | ||
| <echo message="Add-on version release is finished." /> | ||
| </target> | ||
|
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| </project> |
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