fix: resolve source URLs (#562)

dgidb · Jan 24, 2025 · 77198a1 · 77198a1
1 parent 31dcf81
commit 77198a1
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Showing 4 changed files with 11 additions and 9 deletions.
diff --git a/client/src/components/Browse/Sources/BrowseSources.tsx b/client/src/components/Browse/Sources/BrowseSources.tsx
@@ -84,7 +84,9 @@ export const BrowseSources = () => {
     return (
       <>
         <Box className="source-item-name">
-          <a href={src.baseUrl}>{src.sourceDbName}</a>
+          <a href={src.siteUrl} target="_blank" rel="noopener">
+            {src.sourceDbName}
+          </a>
           <Box className="source-versioning">
             Version: {src.sourceDbVersion}
           </Box>

diff --git a/client/src/hooks/queries/useGetDruggableSources.ts b/client/src/hooks/queries/useGetDruggableSources.ts
@@ -14,7 +14,7 @@ const getDruggableSourcesQuery = gql`
       nodes {
         sourceDbName
         sourceDbVersion
-        baseUrl
+        siteUrl
         categoriesInSource {
           name
           geneCount
@@ -62,7 +62,7 @@ const getGeneSourcesQuery = gql`
       nodes {
         sourceDbName
         sourceDbVersion
-        baseUrl
+        siteUrl
         geneClaimsCount
         geneClaimsInGroupsCount
         citation
@@ -102,7 +102,7 @@ const getDrugSourcesQuery = gql`
       nodes {
         sourceDbName
         sourceDbVersion
-        baseUrl
+        siteUrl
         drugClaimsCount
         drugClaimsInGroupsCount
         citation
@@ -142,7 +142,7 @@ const getInteractionSourcesQuery = gql`
       nodes {
         sourceDbName
         sourceDbVersion
-        baseUrl
+        siteUrl
         drugClaimsCount
         drugClaimsInGroupsCount
         geneClaimsCount

diff --git a/server/lib/genome/importers/api_importers/ckb_core/importer.rb b/server/lib/genome/importers/api_importers/ckb_core/importer.rb
@@ -15,14 +15,14 @@ def create_new_source
         {
           source_db_name: source_db_name,
           source_db_version: set_current_date_version,
-          base_url: 'https://ckb.genomenon.org/gene/show?geneId=',
-          site_url: 'https://ckb.genomenon.org',
+          base_url: 'https://ckb-core.genomenon.com/gene/show?geneId=',
+          site_url: 'https://ckb-core.genomenon.com',
           citation: 'Patterson SE, Liu R, Statz CM, Durkin D, Lakshminarayana A, Mockus SM. The clinical trial landscape in oncology and connectivity of somatic mutational profiles to targeted therapies. Hum Genomics. 2016 Jan 16;10:4. doi: 10.1186/s40246-016-0061-7. PMID: 26772741; PMCID: PMC4715272.',
           citation_short: 'Patterson SE, et al. The clinical trial landscape in oncology and connectivity of somatic mutational profiles to targeted therapies. Hum Genomics. 2016 Jan 16;10:4.',
           pmid: '26772741',
           pmcid: 'PMC4715272',
           doi: '10.1186/s40246-016-0061-7',
-          full_name: 'The Clinical Knowledgebase',
+          full_name: 'The Cancer Knowledgebase',
           license: License::CC_BY_NC_SA_4_0,
           license_link: 'https://ckb.genomenon.org/about/index',
         }

diff --git a/server/lib/genome/importers/file_importers/caris_molecular_intelligence.rb b/server/lib/genome/importers/file_importers/caris_molecular_intelligence.rb
@@ -17,7 +17,7 @@ def create_new_source
       @source ||= Source.create(
         {
           base_url: 'https://www.carislifesciences.com/molecular-profiling-technology/',
-          site_url: 'http://www.carismolecularintelligence.com/',
+          site_url: 'https://www.carislifesciences.com/',
           source_db_version: '2020-09-04',  # using static file
           source_db_name: source_db_name,
           full_name: 'Caris Molecular Intelligence',