Name		Name	Last commit message	Last commit date
Latest commit History 153 Commits
TestImages		TestImages
aro-tutorial		aro-tutorial
mpiv_toolbox		mpiv_toolbox
saveastiff_2.2		saveastiff_2.2
.gitignore		.gitignore
Aro_parametersTEMPLATE.m		Aro_parametersTEMPLATE.m
LICENSE		LICENSE
README.md		README.md
RFparameters.m		RFparameters.m
UpdateLog.txt		UpdateLog.txt
UpdateLog_v2.5.txt		UpdateLog_v2.5.txt
addStatsToTrainingSet.m		addStatsToTrainingSet.m
addStatsToWormGaussian.m		addStatsToWormGaussian.m
add_chromosome_count_to_data_file.m		add_chromosome_count_to_data_file.m
analysis_after_masks_pace.m		analysis_after_masks_pace.m
analysis_after_masks_pace.pbs		analysis_after_masks_pace.pbs
aro-tutorial.pdf		aro-tutorial.pdf
autoGaussianSurf.m		autoGaussianSurf.m
auto_mask.m		auto_mask.m
auto_mask_directory.m		auto_mask_directory.m
auto_trim.m		auto_trim.m
auto_trim_directory.m		auto_trim_directory.m
auto_trim_mask_directory.m		auto_trim_mask_directory.m
automask_pace.m		automask_pace.m
automask_pace.pbs		automask_pace.pbs
calculateDeltaStats.m		calculateDeltaStats.m
calculateFISHStatistics.m		calculateFISHStatistics.m
calculateRandStats.m		calculateRandStats.m
calibrateCurve.fig		calibrateCurve.fig
calibrateCurve.m		calibrateCurve.m
calibrateProbabilities.m		calibrateProbabilities.m
classifySpots.m		classifySpots.m
classifySpotsOnDirectory.m		classifySpotsOnDirectory.m
colToX.m		colToX.m
collectDigits.m		collectDigits.m
collect_stats.m		collect_stats.m
convertWormFitFile1p4To2p0.m		convertWormFitFile1p4To2p0.m
convertWormFitFilesWrapper.m		convertWormFitFilesWrapper.m
correctBleachAndFilter.m		correctBleachAndFilter.m
count_chromosomes.m		count_chromosomes.m
count_chromosomes_directory.m		count_chromosomes_directory.m
createSegImages.m		createSegImages.m
createSegmenttrans.m		createSegmenttrans.m
createSpotTrainingSet.m		createSpotTrainingSet.m
doEvalFISHStacksForAll.m		doEvalFISHStacksForAll.m
evalFISHStacks.m		evalFISHStacks.m
findembryosPreManual.m		findembryosPreManual.m
full_run_aro.m		full_run_aro.m
full_run_aro.pbs		full_run_aro.pbs
gfit2.m		gfit2.m
histseries_forSpotTreeProbs.m		histseries_forSpotTreeProbs.m
identifySpots.fig		identifySpots.fig
identifySpots.m		identifySpots.m
imdownsample.m		imdownsample.m
imscale.m		imscale.m
imupsample.m		imupsample.m
laplaceFISH.m		laplaceFISH.m
makeSpotCountInterval.m		makeSpotCountInterval.m
medianfilter.m		medianfilter.m
modaldlg.fig		modaldlg.fig
modaldlg.m		modaldlg.m
morphFilterSpotImage3D.m		morphFilterSpotImage3D.m
mygaussfit.m		mygaussfit.m
natsort.m		natsort.m
natsortfiles.m		natsortfiles.m
newFISHfilter.m		newFISHfilter.m
parametersForSigmoidProbabilityCalibrationCurve.mat		parametersForSigmoidProbabilityCalibrationCurve.mat
parseStackNames.m		parseStackNames.m
produce_mask_thumbnails.m		produce_mask_thumbnails.m
readmm.m		readmm.m
reviewFISHClassification.fig		reviewFISHClassification.fig
reviewFISHClassification.m		reviewFISHClassification.m
rowToY.m		rowToY.m
run_analysis.m		run_analysis.m
sc.m		sc.m
scale.m		scale.m
segment_directory.m		segment_directory.m
show_mask_preview.fig		show_mask_preview.fig
show_mask_preview.m		show_mask_preview.m
spotStatsDataAligning.m		spotStatsDataAligning.m
spotStatsDataAligning2.m		spotStatsDataAligning2.m
trainRFClassifier.m		trainRFClassifier.m
translateToNewCoordinates.m		translateToNewCoordinates.m
updateSpotStats.m		updateSpotStats.m
updateTrainingSet.m		updateTrainingSet.m
visualizeTrainingSet.m		visualizeTrainingSet.m
visualizeWGF.m		visualizeWGF.m
xToCol.m		xToCol.m
yToRow.m		yToRow.m

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