[jvm-packages] Omnibus patch to update all minor dependencies #9501
Workflow file for this run
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| name: XGBoost-R-Tests | |
| on: [push, pull_request] | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| lintr: | |
| runs-on: ${{ matrix.config.os }} | |
| name: Run R linters on OS ${{ matrix.config.os }}, R ${{ matrix.config.r }}, Compiler ${{ matrix.config.compiler }}, Build ${{ matrix.config.build }} | |
| strategy: | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| steps: | |
| - uses: actions/checkout@e2f20e631ae6d7dd3b768f56a5d2af784dd54791 # v2.5.0 | |
| with: | |
| submodules: 'true' | |
| - uses: r-lib/actions/setup-r@e40ad904310fc92e96951c1b0d64f3de6cbe9e14 # v2.6.5 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Cache R packages | |
| uses: actions/cache@937d24475381cd9c75ae6db12cb4e79714b926ed # v3.0.11 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-6-${{ hashFiles('R-package/DESCRIPTION') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-6-${{ hashFiles('R-package/DESCRIPTION') }} | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| run: | | |
| source("./R-package/tests/helper_scripts/install_deps.R") | |
| - name: Run lintr | |
| run: | | |
| MAKEFLAGS="-j$(nproc)" R CMD INSTALL R-package/ | |
| Rscript tests/ci_build/lint_r.R $(pwd) | |
| test-Rpkg: | |
| runs-on: ${{ matrix.config.os }} | |
| name: Test R on OS ${{ matrix.config.os }}, R ${{ matrix.config.r }}, Compiler ${{ matrix.config.compiler }}, Build ${{ matrix.config.build }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release', compiler: 'mingw', build: 'autotools'} | |
| - {os: ubuntu-latest, r: 'release', compiler: 'none', build: 'cmake'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| steps: | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev libglpk-dev libxml2-dev libharfbuzz-dev libfribidi-dev | |
| if: matrix.config.os == 'ubuntu-latest' | |
| - uses: actions/checkout@e2f20e631ae6d7dd3b768f56a5d2af784dd54791 # v2.5.0 | |
| with: | |
| submodules: 'true' | |
| - uses: r-lib/actions/setup-r@e40ad904310fc92e96951c1b0d64f3de6cbe9e14 # v2.6.5 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Cache R packages | |
| uses: actions/cache@937d24475381cd9c75ae6db12cb4e79714b926ed # v3.0.11 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-6-${{ hashFiles('R-package/DESCRIPTION') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-6-${{ hashFiles('R-package/DESCRIPTION') }} | |
| - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5.0.0 | |
| with: | |
| python-version: "3.8" | |
| architecture: 'x64' | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| run: | | |
| source("./R-package/tests/helper_scripts/install_deps.R") | |
| - name: Test R | |
| run: | | |
| python tests/ci_build/test_r_package.py --compiler='${{ matrix.config.compiler }}' --build-tool="${{ matrix.config.build }}" --task=check | |
| if: matrix.config.compiler != 'none' | |
| - name: Test R | |
| run: | | |
| python tests/ci_build/test_r_package.py --build-tool="${{ matrix.config.build }}" --task=check | |
| if: matrix.config.compiler == 'none' | |
| test-R-on-Debian: | |
| name: Test R package on Debian | |
| runs-on: ubuntu-latest | |
| container: | |
| image: rhub/debian-gcc-release | |
| steps: | |
| - name: Install system dependencies | |
| run: | | |
| # Must run before checkout to have the latest git installed. | |
| # No need to add pandoc, the container has it figured out. | |
| apt update && apt install libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev libglpk-dev libxml2-dev libharfbuzz-dev libfribidi-dev git -y | |
| - name: Trust git cloning project sources | |
| run: | | |
| git config --global --add safe.directory "${GITHUB_WORKSPACE}" | |
| - uses: actions/checkout@e2f20e631ae6d7dd3b768f56a5d2af784dd54791 # v2.5.0 | |
| with: | |
| submodules: 'true' | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| Rscript -e "source('./R-package/tests/helper_scripts/install_deps.R')" | |
| - name: Test R | |
| shell: bash -l {0} | |
| run: | | |
| python3 tests/ci_build/test_r_package.py --r=/usr/bin/R --build-tool=autotools --task=check | |
| - uses: dorny/paths-filter@v2 | |
| id: changes | |
| with: | |
| filters: | | |
| r_package: | |
| - 'R-package/**' | |
| - name: Run document check | |
| if: steps.changes.outputs.r_package == 'true' | |
| run: | | |
| python3 tests/ci_build/test_r_package.py --r=/usr/bin/R --task=doc |