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@dms-vep

dms-vep

Deep mutational scanning of viral entry proteins by the Bloom lab

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  1. SARS-CoV-2_XBB.1.5_spike_DMS SARS-CoV-2_XBB.1.5_spike_DMS Public

    Jupyter Notebook 6 1

  2. dms-vep-pipeline dms-vep-pipeline Public

    Pipeline for analyzing deep mutational scanning (DMS) of viral entry proteins (VEPs)

    Jupyter Notebook 3

  3. SARS-CoV-2_Delta_spike_DMS_REGN10933 SARS-CoV-2_Delta_spike_DMS_REGN10933 Public

    Deep mutational scanning of SARS-CoV-2 Delta spike against REGN10933

    HTML 3

  4. SARS-CoV-2_Omicron_BA.2_spike_DMS SARS-CoV-2_Omicron_BA.2_spike_DMS Public

    Jupyter Notebook 2

  5. SARS-CoV-2_Omicron_BA.1_spike_DMS_mAbs SARS-CoV-2_Omicron_BA.1_spike_DMS_mAbs Public

    Deep mutational scanning of SARS-CoV-2 Omicron BA.1 spike against RBD, NTD, and S2 antibodies

    Jupyter Notebook 2 1

  6. Flu_H5_American-Wigeon_South-Carolina_2021-H5N1_DMS Flu_H5_American-Wigeon_South-Carolina_2021-H5N1_DMS Public

    Deep mutational scanning of H5 VEP

    HTML 2 1

Repositories

Showing 10 of 30 repositories
  • SARS-CoV-2_XBB.1.5_spike_DMS_infant_sera Public
    dms-vep/SARS-CoV-2_XBB.1.5_spike_DMS_infant_sera’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 20, 2025
  • Flu_H5_American-Wigeon_South-Carolina_2021-H5N1_DMS Public

    Deep mutational scanning of H5 VEP

    dms-vep/Flu_H5_American-Wigeon_South-Carolina_2021-H5N1_DMS’s past year of commit activity
    HTML 2 1 0 0 Updated Feb 13, 2025
  • HIV_Envelope_TRO11_DMS_3BNC117_10-1074 Public

    Deep mutational scanning using HIV Envelope strain TRO11 to identify mutations that escape neutralization by antibodies 3BNC117 and 10-1074

    dms-vep/HIV_Envelope_TRO11_DMS_3BNC117_10-1074’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 7, 2025
  • HIV_Envelope_BF520_DMS_3BNC117_10-1074 Public

    Deep mutational scanning using HIV Envelope strain BF520 to identify mutations that escape neutralization by antibodies 3BNC117 and 10-1074

    dms-vep/HIV_Envelope_BF520_DMS_3BNC117_10-1074’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 7, 2025
  • Nipah_Malaysia_RBP_DMS_mAb_8G3 Public

    Mapping escape mutations for mAb 8G3

    dms-vep/Nipah_Malaysia_RBP_DMS_mAb_8G3’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 6, 2025
  • LASV_Josiah_GP_DMS_Scripps_mABs Public

    Analysis of DMS data for monoclonal antibodies from Scripps on Lassa virus GP using dms-vep-pipeline-3

    dms-vep/LASV_Josiah_GP_DMS_Scripps_mABs’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 22, 2025
  • SARS-CoV-2_XBB.1.5_spike_DMS_Barnes_mAbs Public
    dms-vep/SARS-CoV-2_XBB.1.5_spike_DMS_Barnes_mAbs’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 10, 2025
  • dms-vep-pipeline-3 Public

    Pipeline for analyzing deep mutational scanning (DMS) of viral entry proteins (VEPs)

    dms-vep/dms-vep-pipeline-3’s past year of commit activity
    HTML 2 0 6 0 Updated Jan 3, 2025
  • RABV_Pasteur_G_DMS Public

    Deep mutational scan of the Rabies Virus Glycoprotein (RABV-G), Pasteur strain

    dms-vep/RABV_Pasteur_G_DMS’s past year of commit activity
    HTML 1 0 0 0 Updated Dec 19, 2024
  • Nipah_Malaysia_RBP_DMS Public

    Analysis of DMS data on Nipah RBP using dms-vep-pipeline-3

    dms-vep/Nipah_Malaysia_RBP_DMS’s past year of commit activity
    HTML 1 0 0 0 Updated Dec 17, 2024
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