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@draeger-lab

Dräger Lab

Computational Systems Biology Lab within the Institute for Bioinformatics and Medical Informatics (IBMI) of the University of Tübingen

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  1. EscherConverter EscherConverter Public

    A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

    Java 15 10

  2. ModelPolisher ModelPolisher Public

    ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

    Java 23 7

  3. SBMLme SBMLme Public

    Encoding ME models in SBML

    Java 7 2

  4. refinegems refinegems Public

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    Jupyter Notebook 10 1

Repositories

Showing 10 of 38 repositories
  • SBSCL Public

    The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

    draeger-lab/SBSCL’s past year of commit activity
    HTML 20 LGPL-3.0 13 15 (3 issues need help) 0 Updated Jan 19, 2025
  • TFpredict Public

    Identification and structural characterization of transcription factors based on supervised machine learning

    draeger-lab/TFpredict’s past year of commit activity
    Java 7 GPL-3.0 3 1 (1 issue needs help) 2 Updated Jan 14, 2025
  • SPECIMEN Public

    Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

    draeger-lab/SPECIMEN’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 1 16 (6 issues need help) 0 Updated Jan 11, 2025
  • ModelPolisher Public

    ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

    draeger-lab/ModelPolisher’s past year of commit activity
    Java 23 7 14 0 Updated Jan 4, 2025
  • refinegems Public

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    draeger-lab/refinegems’s past year of commit activity
    Jupyter Notebook 10 MIT 1 18 (3 issues need help) 0 Updated Dec 4, 2024
  • BOFdat Public Forked from jclachance/BOFdat

    Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

    draeger-lab/BOFdat’s past year of commit activity
    Jupyter Notebook 0 6 0 0 Updated Dec 3, 2024
  • MPClient Public

    Client library for the MPServer

    draeger-lab/MPClient’s past year of commit activity
    Python 2 0 0 0 Updated Nov 29, 2024
  • MPServer Public

    Server Implementation for the Model Polisher

    draeger-lab/MPServer’s past year of commit activity
    Clojure 0 0 0 0 Updated Nov 29, 2024
  • MassChargeCuration Public

    Python module to automatically curate the mass and charge assignments for metabolites in a metabolic model.

    draeger-lab/MassChargeCuration’s past year of commit activity
    Jupyter Notebook 4 1 0 0 Updated Oct 10, 2024
  • SBOannotator Public

    SBOannotator: A Python tool for the automated assignment of Systems Biology Onotology terms

    draeger-lab/SBOannotator’s past year of commit activity
    Python 8 GPL-3.0 1 1 0 Updated Jul 15, 2024
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